Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03468 ATGGCTACCGCAATCACTTGGAGATTTTCTGGCAACAATGGCACCACCCTTGCTTCTAATGATTTGGAAAGAAATGGTGATGGCAAGGCTCAAGATTCAGAGGCTCCAACTCCCCATTCTGCTCTGAAAATGGGATTGAGAGAACGTAGCAGCAGCGGGATGGAGGATGCAGATGGGACATTAGCAAGTATTGCCCAATGCATTGAGAAGCTACGTCAGGGCTCATCTTCTATGCAAGGGAAAGAGTATTCCTTGAAGCAATTATCGGAGCTTATTGATACGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCATTCTCAAGCAGTTCCGGTGCTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAGGCCGCAACTGTCTTGGGCTCACTCTGTAAAGAAAATGAGTTAAGGGTGAAAGTCTTGCTTGGAGGATGTATTCCTCCTTTGCTTGGTCTACTAAAGTCTAGTTCTGAAGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTCTCTCAAGGTGATGCCAAAGATCATGTTGGATCAAAAATCTTTTCTACCGAAGGAGTTGTTCCAGTGCTCTGGGAACAGCTGCAAAAGGGCCTAAAGAATGGAAGTGTAGTAGATAGTTTATTGACTGGAGCATTGAAAAATCTCTACAGCAGTACTGAGAGATTCTGGAATTCGACAATACAGGCTGGAGGAGTGGAGATATTGCTGAAGTTACTGACAACTGGACAGTCTAGCACTTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAAGATGCATCTTTTTGTTCAAAGGTATTGAAAGCAGATGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCAGTTAGAGCTGAAGCAGCTGGTGCTCTTAAGTCTCTATCAGCCCAGTGCCAAGATGCTAGGAAAGAGATAGCTAATTCCAATGGCATTCCTGCTTTAATTAATGCTACCATCGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCGATACAGGAGAATGCTATGTGTGCTCTCGCAAACATCTCTGGCGGTTTGTCTTATGTGATTTCCAGCCTTGGTCAAAGCCTTGAGTCATGCTCCTCACCGACCCAAACTGCTGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCTACTAGAGCATCGGATCCTTTGGCAGTTGAGCAGACATTACTTGAGCAATTCAAACCACGCTCTCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCTCTTGCTAGTTTGTATGGAAATCCTATACTCTCACTTAAACTTGCAAATTCTGATGCAAAGCGTCTGCTTGTTGGTCTAATAACAATGGCCGCTAATGAAGTGCAAGATGAGCTTCTAAAAGCTCTCTTGACACTGTGCAATAGTGAGTGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAACTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAATGTGCTGTTGCCCTGCTCTGTCTTTTGTCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAGATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCGGCAACAATCCTCAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCAGTTCCTGCATTGTTGTGGCTGTTGAAGAATGGAAGCCCAAACGGGAAGGAGATTGCAGCAAAGACCTTGAATCATTTAATTCATAAATCTGATACGGCAACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAGTCTAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTTCTCTTAGTGACCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCGATCAATACAATGATAAAGTTATTGAGCTCTACAAAGGAAGAAACTCAGGCAAAGTCAGCCTCAGCGTTGTCAGGAATTTTTGAAACAAGGAAAGATTTGAGAGAAAGCAATATTGCTGTTAAAACTCTTTGGTCAGCCATGAAGTTGCTTAATAATGAATCCGGAAGTATATTAGTGGAGTCCTCACGCTGCCTAGCTGCAATATTTCTTTCCATCAAAGAGAACAGAGAGGTGGCTGCTAATGCTGGTGATGCATTATCCTCCCTAGTTGCATTAGCTAGCTCTTCAGATTTGGAAGTAGCAGAGCTGGCTACGTGTGCTTTGGCAAACCTTTTTTTGGATAGTGAAATTGCTGAGAATGCTTTCGCGGAGGAAGTTATTTTGCCCGCTACCAGAGTATTGCGTGAAGGCACAAAATCTGGAAAAACACATGCAGCAGCAGCAATCGCTCGCCTTTTGCATTCTAGGCAAGTTGATTATGCTGTAAATGATTGTGTGAATCGTGCCGGTACTGTTCTTGCATTAGTTTCTTTCTTGGGTTCTGTTATTAATGAACCTGTTGCAACAGCAGAGGCTCTAGAAGCACTTGCCATTCTGTCCAGGTTGAAAGAGACCACTGCACTTAGTAAACCTGCTTGGAGGATTTTGGTCGAATTCCCTAAAAGCATAACCCCAGTAGTTCTGTCAATTGCTGATTCTACACCAGTGCTGCAGGATAAAGCTATTGAAATAATATCTCGATTATGTAAGGATCAGCCTTCTGTGTTAGGAGAGACTGTTGCTACTGCATCTGGATGTATATCTTCAATAGCTAAGAGGATCATCAATTCCACTTCTACAAATATGAAGGTCAAAATTGGGGGAGCTGCAATTCTTATTTGTGCTGCTAAAGAAAATCACCAAAGGCTTGTGGAGGATCTAAATATATCAAACTTGTGTGCTAATCTTGTACAGTCGCTTGTTGATATGCTTATTTCTGCACAGGCTACTTCAGTTAATCAGGATGGTGTCAACAAGGAAGTTATCAGCATTTGCAGGCATACAAAAGACATCAATGATGGTAAATTGACCAACATCACCACCATTATATCTGGTGCTGATGTAGCTTTATGGTTACTGTCTGTTCTTGCTTGTCATGACGAAAAAAGTAAAATTGCAATAATGGAGGCTGGAGCGATTGAGATTCTCACCGACAGGATTGCAAATTTTTCCTCTCAGTACAGCCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTATGTTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACAATGATATCTATTCCAGCCCTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTATCTGTGGCAAATTCTGGTGTGGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATGTTGATATACAGGATCTTCTGGAATTGTCAAATGAATTTTCATTGGCACCTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTCGATGACATTAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTTAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGATTTTGACTGACCTTGCTAGAGATTGTCCATCAAATAAGATTGTAATGGTAGAGTCTGGGGCCATAGAGGCACTTACCAAGTATCTTTCACTGGGTCCACAAGATGCAATTGAAGAAGCTGCTACAGATCTGTTAGGAATTTTGTTTAGTAGTGCTGAGATAAGGAAACATGAGTCAGCATTTGGTGCTGTAACTCAACTTGTAGCTGTGCTACGTTTAGGGGGAAGAGCTGCAAGGTATAGTGCTGCTAAAGCCTTGGAAAGTTTATTTTTGGCTGACAACATTAGAAACGCAGAGACAGCCCGACATGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGCTTAGAGAGAGAGCAACATGCTGCGATTGCTGCGTTAGTTAAGTTACTGAGTGAAAATCCTTCAAGAGCACTGGCTGTTGCTGATGTTGAGATGAATGCCATTGATGTTCTTTGCAGAATTCTTTCATCAGACTGTTCAATGGACCTCAAAGGGGATGCTGCTGAACTATGTTGTGTTCTTTTTGGAAATACAAGGATTCGATCTACAATGGCTGCTGCACGGTGTGTTGAACCTCTGGTCTCTCTCCTTGTGAGTGAGTTTAGTCCAGCTCATCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGGTGATGAGCAATTGGCTGAGTTAGTTGCTGCACATGGTGCAGTTATTCCTCTCGTTGGCCTACTTTTTGGTAGGAATTTTGTACTTCATGAGGCCATTTCCAGAGCACTGGTCAAGTTAGGAAAAGATCGACCTGCTTGTAAAATGGAAATGGTGAAATCTGGAGTCATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTCTGTGCAGCATTTGCTGAATTGTTACGGATATTGACCAATAATGCTAGCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTCGAACCCCTGTTCTTTTTGCTAACAAGACAAGAATTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTAGTTAATATCTTAGAGCATCCGCAATGCCGTGCTGATTACACATTAACTTCTCACCAAGCTATTGAACCACTCATCCCCTTGCTTGATTCTCCAATAGAAGCAGTCCAACAGTTGGTTGCTGAGCTTCTCTCACATCTACTTTTAGAAGAACACCTTCAGAAGGATCCAGTGACACAGCAAGTAATTGGACCTCTTGTGCGAGTTCTTGGTTCTGGCATACAAATATTGCAGCAGAGAGCTTTGAAGGCCCTTGTCAGTATTGCAATTGTATGGCCAAATGAAATTGCAAAAGAGGGAGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCTGATCCGTCCATTCCGCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAATTCCTGTTGCCGTTTTGGTAAGGTTGCTTCAATCTGGATCAGAGAGCACAATTAGTGGTGCATTAAATGCTCTTCTTGTATTGGAAAGTGATGATGAATCTAGTGCAGCCGCAGAGGCAATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTTAGATCTCATCAGTGTGAGGACACTGCTGCAAGACTCTTAGAAGTATTGCTTAACAATGTAAAGATTAGAGAAACCAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGACCCACAAACTCAAGCACAACAAGCAAGGTTATTAGCGACTTTGGCTCTCGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAGCTGATGCAGTCTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTCATTGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCCGAGGCCAGTGGGGTTCAGGTTATGTTGGATCTGATTGGTTCAGGTGATCCTGAAACATCTGTCCAGGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACCGCTGCTATTGAAAAGGATTTATGGGCTACTGGAACTGTGAACGACGAGTATCTTAAAACCTTAAATTCTCTATTTAGCATCTACCCAAAGCTGAGAGCAACTGAACCAGCAACGCTCAGCATTCCACATCTGGTTACATCCTTAAAGACAGGTTCAGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCGTGCCCAGCAGAAGTTTCAAGAGCTCAGTCCATAGCAGCCGCTGATGCTATTCCTTTGTTACAGTACTTAATCCAGTCTGGCCCACCTAGGTTTCAAGAGAAGGCAGAGTTTCTATTGCAGTGTTTGCCTGGGACATTGGTGGTGATTATCAAGTGCGGTAATAATATGAAGCAGTCTGTTGGAAATCCGAGTGTTTACTGCAAGCTTACTCTGGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGTCCCAACCCAGAGTGGGATGAGAGTTTCTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAACAAGAGTAAAATGGGGAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTGGTGATGCTGGGGGCAGTATCCGGAGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGCCCCTCGAGAAATTTAGAAATAGAATTTCAATGGTCTAACAAGTGA 6468 0.4306 MATAITWRFSGNNGTTLASNDLERNGDGKAQDSEAPTPHSALKMGLRERSSSGMEDADGTLASIAQCIEKLRQGSSSMQGKEYSLKQLSELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSEEGQVAAAKTIFAVSQGDAKDHVGSKIFSTEGVVPVLWEQLQKGLKNGSVVDSLLTGALKNLYSSTERFWNSTIQAGGVEILLKLLTTGQSSTLANVCFLLACMMMEDASFCSKVLKADATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCQDARKEIANSNGIPALINATIAPSKEFMQGEYAQAIQENAMCALANISGGLSYVISSLGQSLESCSSPTQTADTLGALASALMIYDDKAESTRASDPLAVEQTLLEQFKPRSPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNSECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLREGSAASDAINTMIKLLSSTKEETQAKSASALSGIFETRKDLRESNIAVKTLWSAMKLLNNESGSILVESSRCLAAIFLSIKENREVAANAGDALSSLVALASSSDLEVAELATCALANLFLDSEIAENAFAEEVILPATRVLREGTKSGKTHAAAAIARLLHSRQVDYAVNDCVNRAGTVLALVSFLGSVINEPVATAEALEALAILSRLKETTALSKPAWRILVEFPKSITPVVLSIADSTPVLQDKAIEIISRLCKDQPSVLGETVATASGCISSIAKRIINSTSTNMKVKIGGAAILICAAKENHQRLVEDLNISNLCANLVQSLVDMLISAQATSVNQDGVNKEVISICRHTKDINDGKLTNITTIISGADVALWLLSVLACHDEKSKIAIMEAGAIEILTDRIANFSSQYSQIDYKEDSSMWICAMLLAILFQDRDIIRAHATMISIPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGVAGGLISLLGCADVDIQDLLELSNEFSLAPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTDLARDCPSNKIVMVESGAIEALTKYLSLGPQDAIEEAATDLLGILFSSAEIRKHESAFGAVTQLVAVLRLGGRAARYSAAKALESLFLADNIRNAETARHAVQPLVEILNTGLEREQHAAIAALVKLLSENPSRALAVADVEMNAIDVLCRILSSDCSMDLKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAHHSVVRALDRLVGDEQLAELVAAHGAVIPLVGLLFGRNFVLHEAISRALVKLGKDRPACKMEMVKSGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFFLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPIEAVQQLVAELLSHLLLEEHLQKDPVTQQVIGPLVRVLGSGIQILQQRALKALVSIAIVWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEFYLEIPVAVLVRLLQSGSESTISGALNALLVLESDDESSAAAEAMAESGAIEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTADAVSACRALVNVLEDQPTEEMKVIAICALQNLVMYSRSNKRAVAEASGVQVMLDLIGSGDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKTLNSLFSIYPKLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKCGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03468 2155 Gene3D - 1398 1524 IPR011989 -
Trre6g03468 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515
Trre6g03468 2155 Coils Coil 298 318 - -
Trre6g03468 2155 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1382 1616 - -
Trre6g03468 2155 CDD C2 2036 2126 - -
Trre6g03468 2155 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 29 2155 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trre6g03468 2155 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2034 2143 IPR035892 -
Trre6g03468 2155 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2034 2155 - -
Trre6g03468 2155 Pfam Armadillo/beta-catenin-like repeat 105 135 IPR000225 GO:0005515
Trre6g03468 2155 Pfam Armadillo/beta-catenin-like repeat 526 566 IPR000225 GO:0005515
Trre6g03468 2155 SUPERFAMILY ARM repeat 1189 1570 IPR016024 -
Trre6g03468 2155 Gene3D - 51 408 IPR011989 -
Trre6g03468 2155 Gene3D - 1532 2033 IPR011989 -
Trre6g03468 2155 SMART arm_5 818 860 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 568 608 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 526 566 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 1441 1481 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 1231 1272 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 1483 1523 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 94 136 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 1400 1440 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 731 772 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 1611 1650 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 1735 1773 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 269 310 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 312 361 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 1568 1609 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 1861 1901 IPR000225 GO:0005515
Trre6g03468 2155 SMART arm_5 137 177 IPR000225 GO:0005515
Trre6g03468 2155 MobiDBLite consensus disorder prediction 15 41 - -
Trre6g03468 2155 Gene3D - 644 821 IPR011989 -
Trre6g03468 2155 Pfam C2 domain 2034 2130 IPR000008 -
Trre6g03468 2155 Gene3D C2 domain 2034 2155 IPR035892 -
Trre6g03468 2155 SUPERFAMILY ARM repeat 1582 2032 IPR016024 -
Trre6g03468 2155 SUPERFAMILY ARM repeat 348 687 IPR016024 -
Trre6g03468 2155 SUPERFAMILY ARM repeat 73 387 IPR016024 -
Trre6g03468 2155 ProSiteProfiles C2 domain profile. 2015 2132 IPR000008 -
Trre6g03468 2155 Gene3D - 822 1169 IPR011989 -
Trre6g03468 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1198 1242 IPR000225 GO:0005515
Trre6g03468 2155 SUPERFAMILY ARM repeat 615 968 IPR016024 -
Trre6g03468 2155 Gene3D - 1180 1397 IPR011989 -
Trre6g03468 2155 Gene3D - 414 643 IPR011989 -
Trre6g03468 2155 SMART C2_3c 2035 2131 IPR000008 -
Trre6g03468 2155 SUPERFAMILY ARM repeat 883 1161 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03468 Trre-Chr6 34665103 34681691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03468 489 621 U-box Gene Family AT2G23140 40.741 5.18e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03468 - - gmx:100816765 3642.05