Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03458 ATGCTTTTGGCTTTGCAGGCTATGGGAAATGCGAGTTTGGCGAAGATGAGTCCAGAATATGGCCTATATACAAGTATTGTGCCACCTCTTATTTATTCTTTGATAGCAAGTTCAAGGGAGATAGTAATAGGACCTGTAACTGTAGATTCATTGCTACTTTCATCAATGATTCAAACATTGAAAGATCCTATAAATGATCCAATTGCCTATACTCAGCTTGTTTTGACTGCAACTTTTTTTACTGGTGTCTTCCAAGTTGCTTTTGGATTTCTTAGGTTCGGATTTCTGGTAGATTATCTTTCTCATGCCACAATGGTAGGGTTCTTGGCAGCAGTTGCCATAGGCATTGTACTACAACAATTGAAAGGATTATTTGGAATCACTCACTTTACTAACAAAACTGATTTAATTTCTGTGATTAAATCTCTTTGGACATCCTACATAAACCAATCAGAATGGCATCCTTACAATTTTTTTATTGGATTCTCATTTTTGTCCTTCATCATACTTACAAAATTTATTGGGAAAAGGAAAAAGAAATTGTTGTGGCTGTCACACTTGGCTCCTCTTGTTTCATTCATTATATCAACTTTTATTGCATATAAAGTAAATGTTCATCAAATTAAACTTGAGGACTATAAAATTGAAGTCTTAGGACCAATCAAAGGAGGTAGCTTAAATCCAAGTTCACTCAACCAATTACAACTTGACGGTAATGGTAAATATTTGGGTCCTTTAATCAAAATAGCCTTAACCGTTGCTATTATTTCAACCACGGAGTCTGTAGCTGTTGGCAGAATATTTGCATCACTTAGAGGTTACAATATTGATCCAAATAGAGAAGTTTTATCCTTAGGCATAATGAACATTTTTGGATCCTTCACATCTTGCTATGTTGCATCAGGTTCAATTTCACGGACGGCTGTAAATTATAACGCTGGCTCTCAAACAACGGTGTCGAGCATAGTGATGGCACTCACAGTGTTGATGTCCCTTAAATTTTTAACAAAACTCTTATATTTCACTCCCAAAGCTATGCTAGCCGCAATAATTCTTTCAGCTGTACCAGGACTTGTTGATTTCAAAAAAGCATATGAAATTTGGAAGGTTGATAAATTAGATTTTCTTGCTTGTGCTGGAGCTTTCTTTGGAGTATTGTTTTCATCTGTGGAAATGGGCCTTGCAATTGGGGCAGCGATATCATTTACGAAGATAATTGTGATTTCGATTCAACCTAGCATAGCGGTTGTTGGAAGGCTTCCGGGAACAGATGCATATGGTGACGTAGAACAATATCCAATGGCGGTTAACATGTTTGGTGTTTTGGTGGTCTCTATTAAATTTGCTTGGCTTTGTTTCGCAAATGCAAGTCCTATTAGGGAAAGGATCGAGAAATGGGTGATCGATGAAGGTGAAAATAATAAAGGAGAAAGTACTATCAAAGTCGTCATTATCGATACATCAAGTCTTGTGAGTATTGACACAGCTGGAATCACTTCTTTGATGGATCTGAATAAGAATCTTACATTACATGGAGTGAAATTATCCATCGCTAATCCAAGGTGGCAAGTAATTCACAAATTAAGATTGGCTAACTTTGTGAATGAAATTGGAGGAAGGGTTTTCTTGTCTGTGGGAGAAGCTATAGATGCAATACTTAGTGCTAAAATGGCTACCGTATAA 1683 0.3666 MLLALQAMGNASLAKMSPEYGLYTSIVPPLIYSLIASSREIVIGPVTVDSLLLSSMIQTLKDPINDPIAYTQLVLTATFFTGVFQVAFGFLRFGFLVDYLSHATMVGFLAAVAIGIVLQQLKGLFGITHFTNKTDLISVIKSLWTSYINQSEWHPYNFFIGFSFLSFIILTKFIGKRKKKLLWLSHLAPLVSFIISTFIAYKVNVHQIKLEDYKIEVLGPIKGGSLNPSSLNQLQLDGNGKYLGPLIKIALTVAIISTTESVAVGRIFASLRGYNIDPNREVLSLGIMNIFGSFTSCYVASGSISRTAVNYNAGSQTTVSSIVMALTVLMSLKFLTKLLYFTPKAMLAAIILSAVPGLVDFKKAYEIWKVDKLDFLACAGAFFGVLFSSVEMGLAIGAAISFTKIIVISIQPSIAVVGRLPGTDAYGDVEQYPMAVNMFGVLVVSIKFAWLCFANASPIRERIEKWVIDEGENNKGESTIKVVIIDTSSLVSIDTAGITSLMDLNKNLTLHGVKLSIANPRWQVIHKLRLANFVNEIGGRVFLSVGEAIDAILSAKMATV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03458 560 PANTHER SULFATE TRANSPORTER 5 553 IPR001902 GO:0016020|GO:0055085
Trre6g03458 560 Pfam Sulfate permease family 2 379 IPR011547 GO:0016020
Trre6g03458 560 Gene3D STAS domain 411 555 IPR036513 -
Trre6g03458 560 Pfam STAS domain 440 548 IPR002645 -
Trre6g03458 560 SUPERFAMILY SpoIIaa-like 450 552 IPR036513 -
Trre6g03458 560 CDD STAS_SulP_like_sulfate_transporter 432 543 - -
Trre6g03458 560 ProSitePatterns SLC26A transporters signature. 18 39 IPR018045 GO:0008271|GO:0008272
Trre6g03458 560 ProSiteProfiles STAS domain profile. 451 552 IPR002645 -
Trre6g03458 560 NCBIfam sulfate permease 6 544 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03458 Trre-Chr6 34510804 34514281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03458 6 557 Inorganic Solute Cotransporters AT5G10180 54.676 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03458 K17469 - gmx:100817841 787.334