Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03456 ATGGGAACTTCAAGAGAGATAGTAATTGGTCCAGTGGCAGTAGTTTCCTTGCTGTTATCCACAATGGATCAAAAATTGATAGACCCATCTACTGATCCAATTGGTTATACAAAGCTTATTTTTCTTGCTACTCTCTTTGCTGGTATCTTCCAAACCGCGTTTGGATTGTTCAGGTTGGGGTTTCTTGTGGATTTTCTGTCACATGCTGCAATTGTTGGATTTGTAGCAGGAGCTGCAATTGTGATTGGGCTTCAACAGTTGAAGGGACTGTTTGGAATCACTCATTTTACAACAAAAACAGACATAATCTCTGTCATGAAAGCTGTTTGGGAAGCATTTCATAACCCCTGGAACCCTCACAATTTCTTCCTCGGAGCTTCATTCTTGGTGTTCATCCTTACAACTAGATTTGTGGGTAAAAGGAAGAAGAAATTGTTCTGGTTGGCATCAATTTCACCACTAGTATCAGTTATACTGTTGACTCTGGTTGTTTTTCTAACACGAGCCGATAAAAATGGAGTTAAAATTGTGAAACATGTCAAAGGGGGACTCAATCCAATCTCCATCAATCAGCTAGACTTTAACAGTCCCCATGTTGTAGATGTCGCGAAAATTGGACTTATCGTTGCTGTTGTTGCACTTACCGAATCTGTTGCTGTTGGACGATCTTTTGCATCCATAAAAGGATACCAACTTGATGGAAACAAAGAAATGATGTCAATAGGCTTCACAAACATCATTGGATCTCTCACATCTTGTTATGTTGCAACTGGTTCTTTCTCGCGCACCGCTGTTAATTACGCGGCTGGATGTGAAAGCTTAATATCCAACATTGTGATGGCCATTACAGTGATGATATCACTGCAGTTTTTGACAAATCTGTTGTATTATACACCAATTGCTATAATTGCATCAGTGATCATCTCAGCTCTACCAGGACTCATAGACATAACTGAAGCTTACAAAATTTGGAAGGTTGATAAACTTGACTTTCTAGCTTGCATTGGTGCCTTCTTTGGTGTACTATTTGCTTCTGTGGAGATTGGTCTTCTAGTAGCGGTGGCAATATCATTTACAAAGATAATTCTGATCTCAATTCGACCAAGCACGGAAACTTTAGGAAAACTTCCTGGAACTGATATGTTCTGTGATGTTGATCAGTATCCTATGGCAATTCAGATTCCAGGGGTTATGATAATACGTATGAAATCTGCATTACTTTGCTTTGCAAATGCCAATTTCGTTAAAGAAAGGATCATCAAATGGGTCACTCAGGAAGAATCAGAAGATGACAAGGAAAATTCAAAAAGCTCCATTCAACTTGTTATTCTTGACACCTCGAATTTGGCGAACATTGACACCTCTGGAATTGCTTCTATGGAGGAACTATACAAGTGTTTGTCTTCACATGGGAAGCAGTTGGCCATTGCAAATCCAAGATGGCAAGTGATTCACAAGCTAAAGGTGTCAAACTTTGTCAACAAAATAGGTGGCAGAGTCTATCTAACTGTTGAAGAAGCTATTGCTGCAAACAGCAAGAGTAATCAGTTCTAG 1554 0.3945 MGTSREIVIGPVAVVSLLLSTMDQKLIDPSTDPIGYTKLIFLATLFAGIFQTAFGLFRLGFLVDFLSHAAIVGFVAGAAIVIGLQQLKGLFGITHFTTKTDIISVMKAVWEAFHNPWNPHNFFLGASFLVFILTTRFVGKRKKKLFWLASISPLVSVILLTLVVFLTRADKNGVKIVKHVKGGLNPISINQLDFNSPHVVDVAKIGLIVAVVALTESVAVGRSFASIKGYQLDGNKEMMSIGFTNIIGSLTSCYVATGSFSRTAVNYAAGCESLISNIVMAITVMISLQFLTNLLYYTPIAIIASVIISALPGLIDITEAYKIWKVDKLDFLACIGAFFGVLFASVEIGLLVAVAISFTKIILISIRPSTETLGKLPGTDMFCDVDQYPMAIQIPGVMIIRMKSALLCFANANFVKERIIKWVTQEESEDDKENSKSSIQLVILDTSNLANIDTSGIASMEELYKCLSSHGKQLAIANPRWQVIHKLKVSNFVNKIGGRVYLTVEEAIAANSKSNQF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03456 517 FunFam Sulfate transporter 31 367 514 - -
Trre6g03456 517 Pfam STAS domain 388 507 IPR002645 -
Trre6g03456 517 ProSiteProfiles STAS domain profile. 407 511 IPR002645 -
Trre6g03456 517 PANTHER SULFATE TRANSPORTER 1 511 IPR001902 GO:0016020|GO:0055085
Trre6g03456 517 CDD STAS_SulP_like_sulfate_transporter 388 497 - -
Trre6g03456 517 Gene3D STAS domain 367 514 IPR036513 -
Trre6g03456 517 SUPERFAMILY SpoIIaa-like 392 510 IPR036513 -
Trre6g03456 517 Pfam Sulfate permease family 1 335 IPR011547 GO:0016020
Trre6g03456 517 NCBIfam sulfate permease 1 499 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03456 Trre-Chr6 34500818 34510140 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03456 1 510 Inorganic Solute Cotransporters AT5G10180 68.885 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03456 K17469 - gmx:100781327 863.988