Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03452 ATGAATCTAACAACACCATCTCTTCCACCATTAGAAGTGTTAATGGACCTTGAGAATGAGAACAATGGTACAGAAAATAGGAAACTATGGGTGCTGAATCCTCCGGAGCCACCATGCATGCTACGTCGCGTCATGGAAAATATCAAGGACAACATCTTGCATTATTCGATTCGAAACCAATTCTTTTCTCTCAAACATCAATCTTCTCCAAAATTAGTATTACCCTTGTTGTTTCCTATCTTTAATTCACTCAAAAACTACAATGTTCACAAGTTCAAGTGCGATGTCTTAGCGGGTCTAATCCTCGCAATCTTTGCTATTCCACAGGCTATGGGAAATGCGAGTTTGGCGAAGATGAGTCCAGAATATGGCCTATATACAAGTATTGTGCCACCTCTTATTTATTCTTTGATAGCAAGTTCAAGGGAGATAGTAATAGGACCTGTAACTGTGGATTCATTGCTACTTTCATCAATGATTCAAACATTGAAAGATCCTATAAATGATCCAATTGCTTATACCCAGCTTGTTTTGACTGCAACTTTTTTTACTGGTGTCTTCCAAGTTGCTTTTGGATTTCTTAGGTTCGGATTTCTGGTAGATTATCTTTCTCATGCCACAATGGTAGGGTTCTTGGCAGCAGTTGCCATAGGCATTGTACTACAACAATTGAAAGGATTATTTGGAATCACACACTTTACTAACAAAACTGATTTAATTTCTGTGATTAAATCTCTTTGGACATCCTACAAAAACCAATCAGAATGGCATCCTTACAATTTTGTTATTGGATTCTCATTTTTGTCCTTCATCATACTTACAAAATTTATTGGGAAAAGGAAAAAGAAATTGTTGTGGCTGTCACACATGGCTCCTCTTGTTTCATTCATTATATCAACTTTTATTGCATATAAAGTAAATGTTCATCAAATTAAACTTGAGGACTATAAAATTGAAGTCTTAGGACCAATCAAAGGAGGTAGCTTAAATCCAAGTTCACTAAACCAATTACAACTTGACGGTAATGGTAAATATTTGGGTCCTTTAATCAAAATAGCCTTAACCGTTGCTATTATTTCAACCACGGAATCTGTAGCTGTTGGCAGAATATTTGCATCACTTAGAGGTTCCAATATTGATCCAAATAGAGAAGTTTTATCCTTAGGCATAATGAACATTTTTGGATCCTTCACATCTTGCTATGTTGCATCAGGTTCAATTTCACGGACGGCTGTAAATTATAACGCTGGCTCTCAAACAACGGTGTCGAGCATAGTGATGGCAGTCACAGTGTTGATGTCCCTTAAATTTTTAACAAAACTCTTATATTTCACTCCCAAAGCTATGCTAGCAGCAATAATTCTTTCAGCTATACCAGGACTTGTTGATTTCAAAAAAGCATATGAAATTTGGAAGGTTGATAAATTAGATTTTCTTGCTTGTGCTGGAGCTTTCTTTGGAGTTTTGTTTTCATCTGTGGAAATGGGCCTTGCAATTGGGGCAGCGATATCATTTGCGAAGATAATTGTGATTTCGATTCAACCTAGCATAGCGGTTGTTGGAAGGCTTCCGGGAACGGATGCATATGGTGACGTAGAACAATATCCAATGGCGGTTAACATGCCTGGTGTTTTGGTGGTCTCTATTAAATTTGCTTGGCTTTGTTTCGCAAATGCAAGTCCTATTAGGGAAAAGATCGAGAAATGGGTGATTGATGAAGGCGAAAATAATAAAGGAGAAAGTACTATCAAAGTCGTCATTATCGATACATCAAGTCTTGTGAGTATTGACACAGCTGGAATCACTTCTTTGATGGATCTGAATAAGAATCTTACATTACATGGAGTGAAATTATCCATCGCTAATCCAAGGTGGCAAGTAATTCACAAATTAAGATTGGCTAACTTTGTGAATGAAATTGGAGGAAGGGTTTTCTTGTCTGTGGGAGAAGCTATAGATGCAATACTTAGTGCTAAAATGGCTACCGTATAA 1992 0.371 MNLTTPSLPPLEVLMDLENENNGTENRKLWVLNPPEPPCMLRRVMENIKDNILHYSIRNQFFSLKHQSSPKLVLPLLFPIFNSLKNYNVHKFKCDVLAGLILAIFAIPQAMGNASLAKMSPEYGLYTSIVPPLIYSLIASSREIVIGPVTVDSLLLSSMIQTLKDPINDPIAYTQLVLTATFFTGVFQVAFGFLRFGFLVDYLSHATMVGFLAAVAIGIVLQQLKGLFGITHFTNKTDLISVIKSLWTSYKNQSEWHPYNFVIGFSFLSFIILTKFIGKRKKKLLWLSHMAPLVSFIISTFIAYKVNVHQIKLEDYKIEVLGPIKGGSLNPSSLNQLQLDGNGKYLGPLIKIALTVAIISTTESVAVGRIFASLRGSNIDPNREVLSLGIMNIFGSFTSCYVASGSISRTAVNYNAGSQTTVSSIVMAVTVLMSLKFLTKLLYFTPKAMLAAIILSAIPGLVDFKKAYEIWKVDKLDFLACAGAFFGVLFSSVEMGLAIGAAISFAKIIVISIQPSIAVVGRLPGTDAYGDVEQYPMAVNMPGVLVVSIKFAWLCFANASPIREKIEKWVIDEGENNKGESTIKVVIIDTSSLVSIDTAGITSLMDLNKNLTLHGVKLSIANPRWQVIHKLRLANFVNEIGGRVFLSVGEAIDAILSAKMATV 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03452 663 SUPERFAMILY SpoIIaa-like 542 655 IPR036513 -
Trre6g03452 663 ProSiteProfiles STAS domain profile. 554 655 IPR002645 -
Trre6g03452 663 Pfam STAS domain 535 651 IPR002645 -
Trre6g03452 663 Gene3D STAS domain 514 658 IPR036513 -
Trre6g03452 663 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Trre6g03452 663 Pfam Sulfate permease family 92 482 IPR011547 GO:0016020
Trre6g03452 663 CDD STAS_SulP_like_sulfate_transporter 535 646 - -
Trre6g03452 663 NCBIfam sulfate permease 79 647 IPR001902 GO:0016020|GO:0055085
Trre6g03452 663 PANTHER SULFATE TRANSPORTER 62 656 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03452 Trre-Chr6 34340365 34344786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03452 26 660 Inorganic Solute Cotransporters AT5G10180 52.648 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03452 K17469 - gmx:100817841 878.241