Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03408 ATGTGCGGAATCTTAGCAGTATTGGGTGTGGTGGAGAACACTCAGTTGAAACGTGCTCGGATAATCGAATTGTCTCGTAGATTGAGACATAGAGGTCCTGATTGGAGTGGTTTGCATTCTCATCAAGATTGTTACCTTGCTCATCAACGTCTTGCTATTGTCGACCCTACTTCTGGAGATCAACCTCTTTACAATGAAGACAAAACCGTTATTGTCACAGTAAATGGGGAAATATACAACCATAAGAAATTGAGAGAGGGACTGAATTCTCATCAATTTCGAACGGGAAGTGATTGTGAAGTCATTGCTCATCTTTATGAAGAACATGGGGAAGAGTTTGTTGATATGCTGGATGGGATGTTCTCATTTGTGCTTCTTGATACTAAAGATAAAAGTTTTATTGCGGCTCGTGATGCTATTGGCATTACCCCTCTTTACTTGGGTTGGGGCCATGATGGATCAATATGGTTTGCGTCTGAAATGAAAGCTCTGATGGATGATTGTGAGAGATTCATACCTTTTCCTCCGGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTCTCAGAGACAATTCCATCAACACCCTATGATCCAACGGTTTTGCGTGAGGCCTTTGAGAGGGCTGTTTTCAAAAGAATGATGACTGATGTACCTTTTGGAGTTCTTTTGTCCGGAGGACTGGACTCATCACTTGTTGCTGCAGTGGCTAATCGATATTTGGCTAAATCTGATGCTGCTCGTCAGTGGGGATCGCAGTTGCATACTTTCTGCATTGGTTTAAAGGGATCTCCGGATTTGAAAGCTGCACAAGAGGTAGCAGATTATCTTGGCACTTGTCACCATGAACTTCATTTCACGGTTCAGGAAGGTATAGATGCACTTGAGGAAGTCATTTACCATATTGAAACATATGATGTAACGACTATCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATCAAATCATTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATATTTGGAGGCTACCTGTATTTCCATAAGGCGCCTAACAAGGAAGAGCTTCATCAAGAAACATGCCGAAAAATTAAAGCACTTCATCTTTATGACTGCCTGAGAGCCAATAAATCAACTTCAGCTTGGGGTATAGAGGCACGTGTACCGTTTTTGGACAAAGACTTTATCAACACAGCCATGGCTCTTGATCCGGAGTGGAAAATGATAAGGCCTGATCTTGGAAGGATAGAGAAATGGGTATTGCGCAATGCATTTGATGATGATAAGACTCAATATTTGCCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGTGATGGTGTCGGATACAGTTGGATTGATGGTTTGAAGGATCATGCTAGTGCACAAGTCACAGATGCAATGTTGAAGCATGCCAACTTTGTTTACCCTGAAAACACTCCAACCACAAAAGAGGGATACCACTACAGGACAATTTTTGAGAAGTTATTTCCAAAGAATTCTGCTCGGTTATCAGTGCCAGGAGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAAAAATCTCGACCCTTCTGGACGTGCTGCGCTCGGTGTTCATACAGATGCATACAAGGATGCAGTAGATACCAAAATATCTGAGGCCAACAACAAATCTCTCTGA 1713 0.4244 MCGILAVLGVVENTQLKRARIIELSRRLRHRGPDWSGLHSHQDCYLAHQRLAIVDPTSGDQPLYNEDKTVIVTVNGEIYNHKKLREGLNSHQFRTGSDCEVIAHLYEEHGEEFVDMLDGMFSFVLLDTKDKSFIAARDAIGITPLYLGWGHDGSIWFASEMKALMDDCERFIPFPPGHIYSSKQGGLRRWYNPPWFSETIPSTPYDPTVLREAFERAVFKRMMTDVPFGVLLSGGLDSSLVAAVANRYLAKSDAARQWGSQLHTFCIGLKGSPDLKAAQEVADYLGTCHHELHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHQETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKDFINTAMALDPEWKMIRPDLGRIEKWVLRNAFDDDKTQYLPKHILYRQKEQFSDGVGYSWIDGLKDHASAQVTDAMLKHANFVYPENTPTTKEGYHYRTIFEKLFPKNSARLSVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHTDAYKDAVDTKISEANNKSL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03408 570 PANTHER ASPARAGINE SYNTHETASE 1 555 - -
Trre6g03408 570 FunFam Asparagine synthetase [glutamine-hydrolyzing] 195 514 - -
Trre6g03408 570 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Trre6g03408 570 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Trre6g03408 570 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 199 484 - -
Trre6g03408 570 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Trre6g03408 570 PIRSF Asn_synthetase_glu-h 1 361 IPR006426 GO:0004066|GO:0006529
Trre6g03408 570 PIRSF Asn_synthetase_glu-h 357 516 IPR006426 GO:0004066|GO:0006529
Trre6g03408 570 Gene3D HUPs 195 513 IPR014729 -
Trre6g03408 570 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Trre6g03408 570 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Trre6g03408 570 FunFam Asparagine synthetase [glutamine-hydrolyzing] 2 192 - -
Trre6g03408 570 CDD AsnB 2 192 IPR033738 -
Trre6g03408 570 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03408 Trre-Chr6 33688823 33693403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03408 75 364 PRT Gene Family AT2G16570 26.688 1.07e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03408 K01953 - gmx:732660 1054.28