Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03403 ATGTGGAAAAATGTGAAGAGTGATAGGAATTTGAGTGATAGGAAGAGTGATTCGAGTGATAGGAAGCGTGTTGGAACGGAAAAGAGAAGAGTTTGGAGAAAGAATGATTCTTCCAGTGACAGTGATAGTGAGGATGAAGTTGAATCTCAGAATCAGGGTTATTATTCTAATGTGAGTAGTATTGCTTCTTTGGGTAAACATGATGTGAAGAGGGAGAGGAGAGTGATGCCTAAGAAATTCGATGATGGAACTGATTTTTCAGAGCAGGTTCAGTTAATTAAGTATGAGATTCATAAGAAGAAGTTGAGTCAGAATGGGAATAATCAGGGCGAGGAACAAGAAAACATTCTTAGTCAGACAAGATTTGACGAGTGTGCTATATCACCATTGACAATCAAAGCACTTTCTTCATCCGGTTACATTCATATGACCCGGGTTCAAGAGATCAGCCTTCCTATTTGCCTTGAGGGTGTGGATGTTATGGTCAAGGCTAAAACTGGCACCGGAAAAACTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAAGCTATGAGTAGCAATACCTCTCATCGTGCACCACCAATATATGTTCTTATTCTATGCCCTACCAGAGAACTTGCTAGTCAACTTGCTGCTGAAGCAAAGGTTTTACTGAAATATCATGATGGCATTGGAGTGCAGACTCTAGTTGGAGGTGTACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGAGCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAATCTGGGATATTTGTACGATTGATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTTGGGTTTCGAAAGGATATAGAAAAGATTATTGATTGTTTGCCCCGGCAAAGGCAATCCTTGCTGTTTTCTGCAACCATGCCAAAGGAGGTCCGTCGAATATCTCAAGTTGTTTTGAAAAGGGAACACAAATATGTTGATACGGTTGGAATGGGCTGTGTTGAAACTCCTGTTGAGGGAGATACATTCTCGAAAACCTCAGCTGTATCGAACCCGCTCATACAGGTGGGAATTCCTTCAGACCGTGAACAATATATACATCGTCTAGGAAGAACGGGACGGGAAGGCAAAGAAGGAAACAGCATATTGTTGATTGCACCATGGGAAGAGTATTTTATAAATGAGATCAAGGATATCCCTCTAGAGAAATTCCCCTTGCCAGATTTAGATCTACAGGCACAACTTAAGATTGGGCAATCAATGGCTAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTACAACTCCATCATGGAGATTGGGAGGGAGAAGACCACAGTAGCTATTTCTTTATCTACAACTCCATCATGA 1416 0.4103 MWKNVKSDRNLSDRKSDSSDRKRVGTEKRRVWRKNDSSSDSDSEDEVESQNQGYYSNVSSIASLGKHDVKRERRVMPKKFDDGTDFSEQVQLIKYEIHKKKLSQNGNNQGEEQENILSQTRFDECAISPLTIKALSSSGYIHMTRVQEISLPICLEGVDVMVKAKTGTGKTAAFLLPAIETVLKAMSSNTSHRAPPIYVLILCPTRELASQLAAEAKVLLKYHDGIGVQTLVGGVRFKVDQKRLESEPCQILVATPGRLLDHIENKSGIFVRLMGLQMLVLDEADHLLDLGFRKDIEKIIDCLPRQRQSLLFSATMPKEVRRISQVVLKREHKYVDTVGMGCVETPVEGDTFSKTSAVSNPLIQVGIPSDREQYIHRLGRTGREGKEGNSILLIAPWEEYFINEIKDIPLEKFPLPDLDLQAQLKIGQSMAKIDNDIKEAAYHAWLGYYNSIMEIGREKTTVAISLSTTPS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03403 471 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 275 421 IPR001650 -
Trre6g03403 471 MobiDBLite consensus disorder prediction 1 58 - -
Trre6g03403 471 Pfam DEAD/DEAH box helicase 144 322 IPR011545 GO:0003676|GO:0005524
Trre6g03403 471 SMART ultradead3 139 348 IPR014001 -
Trre6g03403 471 PANTHER RNA HELICASE 363 425 - -
Trre6g03403 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 329 IPR027417 -
Trre6g03403 471 Gene3D - 85 335 IPR027417 -
Trre6g03403 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 442 IPR027417 -
Trre6g03403 471 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Trre6g03403 471 Gene3D - 348 466 IPR027417 -
Trre6g03403 471 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 334 IPR014001 -
Trre6g03403 471 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03403 Trre-Chr6 33646633 33649615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03403 122 325 Eukaryotic Initiation Factors Gene Family AT5G11200 32.195 1.40e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03403 - - lja:Lj4g3v2917670.1 487.648