Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03399 ATGTTCAAAATCTTGGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAGTTGCAATACATATCAGAACTTGAACGAAGTGTGTCTTCATTACAGGCTGAAGTATCAGTATTGTCACCAAGAGTTGCATATTTGGATCATCAGAGGTTACTTCTAAATGTTGATAACAGTGCTCTCAAGCAAAGAATCGCAGCACTTGCCCAAGACAAAATCTTCAAAGATGGTACTTATTCTCATTTCACTTTTTACTGTCATGATTCTAGTACAAGTTTTCTCATTAAATCATTCTTTAGAGTTTTTTAA 306 0.3464 MFKILANRQSAQRSRVRKLQYISELERSVSSLQAEVSVLSPRVAYLDHQRLLLNVDNSALKQRIAALAQDKIFKDGTYSHFTFYCHDSSTSFLIKSFFRVF 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03399 101 PANTHER BASIC LEUCINE ZIPPER 34 4 79 - -
Trre6g03399 101 FunFam Transcription factor VIP1 1 69 - -
Trre6g03399 101 CDD bZIP_plant_RF2 4 50 IPR044759 GO:0003700|GO:0006355
Trre6g03399 101 SMART brlzneu 3 59 IPR004827 GO:0003700|GO:0006355
Trre6g03399 101 Gene3D - 3 71 - -
Trre6g03399 101 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 3 17 IPR004827 GO:0003700|GO:0006355
Trre6g03399 101 Pfam bZIP transcription factor 6 44 IPR004827 GO:0003700|GO:0006355
Trre6g03399 101 SUPERFAMILY Leucine zipper domain 3 53 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03399 Trre-Chr6 33612720 33613218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03399 3 78 bZIP Transcription Factor Family AT3G58120 90.789 2.61e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g03399 bZIP_1 1.8e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03399 - - adu:107478184 136.346