Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03394 ATGTCTAATCCCAACCCAAATTCACATAATCCGACCCGGTTATTTCACCCGCACCAAGATCCAAATACCAACACCGCCGACCCTCACGTTCCGCTTCGGAACCTATCCTTGGTTCGGACCAGAATCGATTCTCTACGAACTTTCCTATCTCAATCCATCAACACCAACGCTCCTCTCACCAACGATCAAACAACCGTCGTCTCCAACCAGATCGTCTCCGCCATCCACCACACCATAGTCAACGCCGCCGCCCTCGTTTCTTACTCTCAAAATCTCACCGTTCCTGTAGCCTCAATCTTCCCACCGAAGAATCTCAGGCCAGAACCCTCCGCCGGCGCCGTAGATAACGCCAAGCAACATAAGCTCGATTCAAAAATCGAACCAACTAAAGACGACGGCGACGACTTTCTCATCGACGACGATTGTGAAATCGTGGAACTCGATGCCGTCGAATTGCTAGCGGAACATCTCCATTTCTGCGAGATTTGCGGGAAAGGATTCAAACGCGATGCGAATCTCCGGATGCATATGAGAGCACACGGTAACAAATTCAAGACGCCAGAAGCGTTAGCGAAGCCTTTAGACGACGGAACACGACGTCGTTCAACGCGATTCTCTTGTCCTTTTGAAGGATGTAATAGAAACAAGAAGCATAAGAAATTCAAGGCTTTGAAATCGGTTATTTGTGTTAAGAATCATTTCAAGAGAAGTCATTGTCCAAAAATGTATTCATGTAACCGTTGTAATAAGAAGAAATATTCAGTGGTTTCGGATTTGAAGAGTCATATGAGACAGTGTGGTGATGATTGTAAGTGGAAGTGTTGTTGTGGGACAACGTTTTCTAGGAAGGATAAGTTGTTTGGACATGTTGCTTTGTTTGAGGGTCATATGCCTGCAGTTGGTTTGGAAGAATGTGAGGAGAAAGGGAAACAAGTTCTTGTGGAAGAATGTGAGGAGAAAGGGAAACAAGTTCTTGTGGAGGAAAGTGAAGAGAAAGAGAAAAGTGATTTTGCAGGTTTCATCACTTTGCCAATTTATAGCTTGCACATTATCATACGGAAATAG 1065 0.4498 MSNPNPNSHNPTRLFHPHQDPNTNTADPHVPLRNLSLVRTRIDSLRTFLSQSINTNAPLTNDQTTVVSNQIVSAIHHTIVNAAALVSYSQNLTVPVASIFPPKNLRPEPSAGAVDNAKQHKLDSKIEPTKDDGDDFLIDDDCEIVELDAVELLAEHLHFCEICGKGFKRDANLRMHMRAHGNKFKTPEALAKPLDDGTRRRSTRFSCPFEGCNRNKKHKKFKALKSVICVKNHFKRSHCPKMYSCNRCNKKKYSVVSDLKSHMRQCGDDCKWKCCCGTTFSRKDKLFGHVALFEGHMPAVGLEECEEKGKQVLVEECEEKGKQVLVEESEEKEKSDFAGFITLPIYSLHIIIRK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03394 354 FunFam Zinc finger 45-like 155 181 - -
Trre6g03394 354 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 18 333 IPR044300 GO:0010044|GO:0010447
Trre6g03394 354 SMART c2h2final6 158 180 IPR013087 -
Trre6g03394 354 SMART c2h2final6 243 264 IPR013087 -
Trre6g03394 354 SMART c2h2final6 205 238 IPR013087 -
Trre6g03394 354 MobiDBLite consensus disorder prediction 1 29 - -
Trre6g03394 354 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Trre6g03394 354 Gene3D Classic Zinc Finger 158 181 - -
Trre6g03394 354 SUPERFAMILY beta-beta-alpha zinc fingers 154 181 IPR036236 -
Trre6g03394 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03394 Trre-Chr6 33481972 33483441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03394 143 304 C2H2 Transcription Factor Family AT1G34370 61.446 5.66e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g03394 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03394 - - cam:101491258 498.819