Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03389 ATGAACTTGGTGTTTGTTCTATTGTTATTGTTGGCTAGTGTTTGTTCTTTTGCACTTCCTCAGCTTGATTTACAAGAAGATGCACTATATGCATTGAAGTCATCTCTGAATGTTTCACCCAACCAGCTTACTAATTGGAACAAAAATCAAGTAAACCCTTGTACTTGGTCCAATGTTTACTGCGACCAGAATAGCAATGTTGTTCAAGTTTCACTAGCATTTATGGGATTTAGTGGAACCTTGACACCAAGAATAGGAGCTCTCAAAAGTCTTACAACTCTTTCTTTACAAGGGAATAACATCAGTGGTGCCATACCAAAAGAATTTGGAAATCTTACAAGCTTGGTGAGATTGGATCTAGATCACAACATATTAACCGGTGAAATACCATCTTCTCTTGGTAATCTTAAAAAGCTTCAGTTCTTGACATTAAGTCAAAACAATCTCAATGGGACTATTCCAGAATCACTTGGCAGTCTTCCAAACTTGAGCAATATTCTGCTAGACTCAAATGATCTCAGCGGACGTATTCCAGAACAGTTATTCAATGTTCCTAAGTACAATTTCACTGGAAATAAGTTGGATTGTGGTGTAAGTTATCTGCATCTTTGCACATCTGATAATGCAAATCAAGGTTCATCACACAAATCAAAAGTAGGTCTCATAGTTGGAACAGTTGTAGGTTTAATTATTATTCTTTTTCTTGGTGGCCTTCTGTTTTTCTGGTGCAAACGGTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGCGAAGTTGATCGGAGAATTACATTGGGTCAAATAAAAAGTTTTTCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAGCGAGAGAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTAGCTGATGGGACAAAAATTGCTGTCAAAAGACTAACCGATTATGAAAGTCCCGGTGGTGATCAAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTTGCTGTCCATAGGAACCTTTTACGGCTCATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTCTCGGCTACGAGAACTCAAACCTGGGGAATCTGTTTTGGATTGGGCTACAAGAAAACGGGTGGCTCTTGGAACAGCTCGTGGCCTTGAATATCTTCACGAGCAATGTGATCCCAAAATTATTCATAGAGATGTAAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTCGGTGACTTTGGTTTGGCAAAATTGGTTGATGTTCGAAGGACTAATGTGACGACTCAAATTCGTGGGACAATGGGACATATAGCTCCCGAATACTTGTCTACCGGAAAATCTTCAGAAAAGACAGATGTTTTTAGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGCGCAATTGACTTTTCACGTTTGGAAGATCAAGATGATGTGTTACTGCTTGACCATGCAAAGAAGCTACAACGGGAGAAAAGACTGGATGCTATTGTTGACCGCAATCTCGATAAAAATTACAACATAGAAGATGTTGAAGTGCTAGTACAAGTTGCATTACTGTGCACGCAAGCAACGCCAGAGGATCGTCCGGCAATGTCAGAGGTTGTAAGAATGTTGGAGGGAGAGGGGCTAACCGAAAGGTGGGAAGAATGGAGGCATGTGGAGGTTACTCGGATGCAAGACTCCGAGAGACTGCAAAGAAGATTTGCGTGGGGAGACGATTCAATTCATAACCAAGATGCCATTGAGTTGTCGGGTGGAAGATGA 1818 0.4065 MNLVFVLLLLLASVCSFALPQLDLQEDALYALKSSLNVSPNQLTNWNKNQVNPCTWSNVYCDQNSNVVQVSLAFMGFSGTLTPRIGALKSLTTLSLQGNNISGAIPKEFGNLTSLVRLDLDHNILTGEIPSSLGNLKKLQFLTLSQNNLNGTIPESLGSLPNLSNILLDSNDLSGRIPEQLFNVPKYNFTGNKLDCGVSYLHLCTSDNANQGSSHKSKVGLIVGTVVGLIIILFLGGLLFFWCKRYKREVFVDVAGEVDRRITLGQIKSFSWRELQIATDNFSERNVLGQGGFGKVYKGVLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVASRLRELKPGESVLDWATRKRVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRRTNVTTQIRGTMGHIAPEYLSTGKSSEKTDVFSYGIMLLELVTGQRAIDFSRLEDQDDVLLLDHAKKLQREKRLDAIVDRNLDKNYNIEDVEVLVQVALLCTQATPEDRPAMSEVVRMLEGEGLTERWEEWRHVEVTRMQDSERLQRRFAWGDDSIHNQDAIELSGGR 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03389 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Trre6g03389 605 Pfam Protein kinase domain 283 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03389 605 Gene3D Phosphorylase Kinase; domain 1 251 358 - -
Trre6g03389 605 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 567 - -
Trre6g03389 605 Gene3D Ribonuclease Inhibitor 23 205 IPR032675 -
Trre6g03389 605 SUPERFAMILY L domain-like 26 193 - -
Trre6g03389 605 CDD TM_EGFR-like 217 248 - -
Trre6g03389 605 SMART serkin_6 282 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03389 605 FunFam Somatic embryogenesis receptor kinase 1 251 358 - -
Trre6g03389 605 ProSiteProfiles Protein kinase domain profile. 282 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03389 605 FunFam Putative LRR receptor-like serine/threonine-protein kinase 22 206 - -
Trre6g03389 605 SUPERFAMILY Protein kinase-like (PK-like) 262 557 IPR011009 -
Trre6g03389 605 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Trre6g03389 605 FunFam Somatic embryogenesis receptor-like kinase 1 359 576 - -
Trre6g03389 605 Gene3D Transferase(Phosphotransferase) domain 1 359 576 - -
Trre6g03389 605 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03389 Trre-Chr6 33444974 33450548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03389 1 605 Receptor kinase-like Gene Family AT5G10290 73.071 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre6g03389 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03389 - - gmx:100786654 981.859