Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03388 ATGTTTGTGGAAATGAACTTGGTGTTTGTTCTATTGTTATTGTTGGCTAGTGTTTGTTCTTTTGCACTTCCTCAGCTTGATTTACAAGAAGATGCACTATATGCATTGAAGTCATCTCTGAATGTTTCACCCAACCAGCTTACTAATTGGAACAAAAATCAAGTAAACCCTTGTACTTGGTCCAATGTTTACTGCGACCAGAATAGCAATGTTGTTCAAGTTTCACTAGCATTTATGGGATTTAGTGGAACCTTGACACCAAGAATAGGAGCTCTCAAAAGTCTTACAACTCTTTCTTTACAAGGGAATAACATCAGTGGTGCCATACCAAAAGAATTTGGAAATCTTACAAGCTTGGTGAGATTGGATCTAGATCACAACATATTAACCGGTGAAATACCATCTTCTCTTGGTAATCTTAAAAAGCTTCAGTTCTTGACATTAAGTCAAAACAATCTCAATGGGACTATTCCAGAATCACTTGGCAGTCTTCCAAACTTGAGCAATATTCTGCTAGACTCAAATGATCTCAGCGGACGTATTCCAGAACAGTTATTCAATGTTCCTAAGTACAATTTCACTGGAAATAAGTTGGATTGTGGTGTAAGTTATCTGCATCTTTGCACATCTGATAATGCAAATCAAGGTTCATCACACAAATCAAAAGTAGGTCTCATAGTTGGAACAGTTGTAGGTTTAATTATTATTCTTTTTCTTGGTGGCCTTCTGTTTTTCTGGTGCAAACGGTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGCGAAGTTGATCGGAGAATTACATTGGGTCAAATAAAAAGTTTTTCCTGGAGAGAACTACAGATAGCTACAGACAACTTCAGCGAGAGAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTAGCTGATGGGACAAAAATTGCTGTCAAAAGACTAACCGATTATGAAAGTCCCGGTGGTGATCAAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTTGCTGTCCATAGGAACCTTTTACGGCTCATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTCTCGGCTACGAGAACTCAAACCTGGGGAATCTGTTTTGGATTGGGCTACAAGAAAACGGGTGGCTCTTGGAACAGCTCGTGGCCTTGAATATCTTCACGAGCAATGTGATCCCAAAATTATTCATAGAGATGTAAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTCGGTGACTTTGGTTTGGCAAAATTGGTTGATGTTCGAAGGACTAATGTGACGACTCAAATTCGTGGGACAATGGGACATATAGCTCCCGAATACTTGTCTACCGGAAAATCTTCAGAAAAGACAGATGTTTTTAGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGCGCAATTGACTTTTCACGTTTGGAAGATCAAGATGATGTGTTACTGCTTGACCATGCAAAGAAGCTACAACGGGAGAAAAGACTGGATGCTATTGTTGACCGCAATCTCGATAAAAATTACAACATAGAAGATGTTGAAGTGCTAGTACAAGTTGCATTACTGTGCACGCAAGCAACGCCAGAGGATCGTCCGGCAATGTCAGAGGTTGTAAGAATGTTGGAGGGAGAGGGGCTAACCGAAAGGTGGGAAGAATGGAGGCATGTGGAGGTTACTCGGATGCAAGACTCCGAGAGACTGCAAAGAAGATTTGCGTGGGGAGACGATTCAATTCATAACCAAGATGCCATTGAGTTGTCGGGTGGAAGATGA 1830 0.406 MFVEMNLVFVLLLLLASVCSFALPQLDLQEDALYALKSSLNVSPNQLTNWNKNQVNPCTWSNVYCDQNSNVVQVSLAFMGFSGTLTPRIGALKSLTTLSLQGNNISGAIPKEFGNLTSLVRLDLDHNILTGEIPSSLGNLKKLQFLTLSQNNLNGTIPESLGSLPNLSNILLDSNDLSGRIPEQLFNVPKYNFTGNKLDCGVSYLHLCTSDNANQGSSHKSKVGLIVGTVVGLIIILFLGGLLFFWCKRYKREVFVDVAGEVDRRITLGQIKSFSWRELQIATDNFSERNVLGQGGFGKVYKGVLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVASRLRELKPGESVLDWATRKRVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRRTNVTTQIRGTMGHIAPEYLSTGKSSEKTDVFSYGIMLLELVTGQRAIDFSRLEDQDDVLLLDHAKKLQREKRLDAIVDRNLDKNYNIEDVEVLVQVALLCTQATPEDRPAMSEVVRMLEGEGLTERWEEWRHVEVTRMQDSERLQRRFAWGDDSIHNQDAIELSGGR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03388 609 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Trre6g03388 609 CDD TM_EGFR-like 221 252 - -
Trre6g03388 609 FunFam Putative LRR receptor-like serine/threonine-protein kinase 26 210 - -
Trre6g03388 609 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Trre6g03388 609 SUPERFAMILY L domain-like 30 197 - -
Trre6g03388 609 Pfam Protein kinase domain 287 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03388 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Trre6g03388 609 Gene3D Transferase(Phosphotransferase) domain 1 363 580 - -
Trre6g03388 609 SMART serkin_6 286 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03388 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 571 - -
Trre6g03388 609 FunFam Somatic embryogenesis receptor kinase 1 255 362 - -
Trre6g03388 609 Gene3D Phosphorylase Kinase; domain 1 255 362 - -
Trre6g03388 609 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
Trre6g03388 609 ProSiteProfiles Protein kinase domain profile. 286 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03388 609 FunFam Somatic embryogenesis receptor-like kinase 1 363 580 - -
Trre6g03388 609 SUPERFAMILY Protein kinase-like (PK-like) 266 561 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03388 Trre-Chr6 33444962 33450548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03388 4 609 Receptor kinase-like Gene Family AT5G10290 72.951 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre6g03388 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03388 - - gmx:100786654 981.859