Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03356 ATGGGTCGCCATTCTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAATTATTCAATTACATAACCATTTTTGGTGTTGGATGTTGGAGTTCAGTTCCCAAACTAGCTGGGTTGGAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTACTTGAGACCTGATTTGAAGAGAGGAATGTTCTCACAACAAGAGGAACATCTTATTATCAGTCTTCATGAATTACTTGGAAATAGGTGGGCACAAATTGCAGCACAATTACCAGGAAGAACAGATAATGAGATAAAGAATTTTTGGAATTCGAGTTTGAAGAAAAAACTAATGAAGCAAGGGATTGATCCAACTACACATAAGTCCTTAATTAATCCAGAATATCATATCAAAGAAGAGAAGAGAATAACAGAAAAACCATCAATGCTAATGCCACTGTCTCAAGAATCAGAAGCACTTCTGAATTGTCACTATAATATTGGTGGATTAGCTTTAACAGAAGCTTCAAGAAAATTTCTCATGAGTATGCCAGCATTGGATCCATTGTGCTACAATTTAAGTGCGAGCAATTATTATCAGAATAACCAATTTGGAACAAATATTTCAAACTATTTCTTCTCTTCAATGCCATGTTTAAATAATTCAGATCAGGTTTCAGAAAATAATAATTCAGTTTCTGAATTTAGTTCTCTTTTGATGAATGAAAATTCAAGTAATAGTACTTCAACCATGATTGAAAATCATGAAGCTGGATTAATATCATGGGAAGGTGAGAACAATAAGTTGTTGAATTTGGATCCTTTGTTGCTGTTTGAAGTAAAATGTGAAGAGTTCATCATGAAGAAAAGTTCATGCCAAGAACAAGAAGGACAATTGGTGACTCATAATTCAATTGATTTCAGTACCTATCCTATAACGTCACTGTCAGAAGATCTAAGTACTCAAACTAATTTTGATGTATAA 978 0.3364 MGRHSSLKQKLRKGLWSPEEDEKLFNYITIFGVGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGMFSQQEEHLIISLHELLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPTTHKSLINPEYHIKEEKRITEKPSMLMPLSQESEALLNCHYNIGGLALTEASRKFLMSMPALDPLCYNLSASNYYQNNQFGTNISNYFFSSMPCLNNSDQVSENNNSVSEFSSLLMNENSSNSTSTMIENHEAGLISWEGENNKLLNLDPLLLFEVKCEEFIMKKSSCQEQEGQLVTHNSIDFSTYPITSLSEDLSTQTNFDV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03356 325 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Trre6g03356 325 Gene3D - 10 66 - -
Trre6g03356 325 SMART sant 12 62 IPR001005 -
Trre6g03356 325 SMART sant 65 113 IPR001005 -
Trre6g03356 325 Gene3D - 68 144 - -
Trre6g03356 325 PANTHER MYB DOMAIN PROTEIN 55 1 278 - -
Trre6g03356 325 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Trre6g03356 325 CDD SANT 16 60 IPR001005 -
Trre6g03356 325 CDD SANT 69 111 IPR001005 -
Trre6g03356 325 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre6g03356 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Trre6g03356 325 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Trre6g03356 325 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Trre6g03356 325 FunFam MYB transcription factor 10 66 - -
Trre6g03356 325 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Trre6g03356 325 FunFam MYB transcription factor 67 128 - -
Trre6g03356 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03356 Trre-Chr6 32710443 32711723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03356 1 144 MYB Transcription Factor Family AT4G01680 74.483 4.78e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g03356 Myb_DNA-binding 4.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03356 K09422 - gmx:100811140 338.961