Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03344 ATGCATCACCACCGTATCCTCTTCGACAAATACCATCCAGGTTACTTCGGTAAAGTTGGTATGCGTTACTTCCACAAGCTTCGTAACAAATTCTATTGCCCAATCGTTAACATCGATAAGCATTGGTCTCTTGTTCTTGAAGATGTTAAGGAAAAAGCTGCCAAATCGAAGAACACTGCACCTGTTGTTGATGTTACTCAGCTTGGTTTCTTTAAGGTTCTTGGTAAAGGTGTTTTACCTAGTAATCAGCCTCTTGTTGTTAAAGCTAAGTTGATTTCTAAGATTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTTCTTACTGCTTAG 336 0.3988 MHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKHWSLVLEDVKEKAAKSKNTAPVVDVTQLGFFKVLGKGVLPSNQPLVVKAKLISKIAEKKIKEAGGAVVLTA 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03344 111 FunFam 60S ribosomal protein L27a 21 111 - -
Trre6g03344 111 Gene3D - 21 111 - -
Trre6g03344 111 ProSitePatterns Ribosomal protein L15 signature. 72 104 IPR001196 GO:0003735|GO:0005840|GO:0006412
Trre6g03344 111 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 7 108 IPR021131 -
Trre6g03344 111 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 111 - -
Trre6g03344 111 SUPERFAMILY Ribosomal proteins L15p and L18e 2 110 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03344 Trre-Chr6 32384990 32385325 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03344 1 111 Cytoplasmic Ribosomal Protein Gene Family AT1G23290 82.883 6.73e-63 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03344 K02900 - tcc:18603983 186.808