Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03298 ATGAAGAAAACTTTTCCCCCAAATTACAACCCTCATTACCACCGTCAACCACCGCACTGTCCCGTTTACCATCACCGGAAACCTGGATTTCATTCCAACCACCGTGTCGATCGTCCTCCAGAGCGAAATCCGCCTCATCGTCCTCCCAATTTCATTCTCAAGCTTCATCTCGGCCGCCGTTCTCTTTGTCGGGATGATGTCGAGTGTCTGATCGGTAAATGTAAACCTAATCCTGATAATTTCCTTTTTTACCCCTGCGATGGTGTTGCTGCTATACTGAATTTCATTCAGTGGACCGATGCTCGTGATGCTGTTGTTTGGTTTTGGGAATCGCGTCTTTCTGAAGAGCATGATTTCACGCCAGAGTTGATTTCCAATGTTATGGTGCCTTCTGATAGGGTTGAGCTTGAAGGTAGTCTTCGGAGGGTTTTTGTTAGCTATGTGAAGGAGTTGATGGAAGGGAAGGAAGTGAAGAGATGGGTGGAGGAGTGGGATCGATTGTCGAAGGAGATTGCCAGTGTTGTGAGTTTGTTGGGTAAGCCTTTTCCAATTAGGGTTCAGAATCAGAAGATTCAGAGAAAGAAAGGGCTTGTTGATGAGAAGAGTTTGGTTGAAAGGAGATTGAAGGAGTTTGAGTTTGCAATGGAGTGCATTTTGCAGCATCTTGGAGAGAGTAATAATGTGGAGTGTGGTGGAGATTTTGTTCCTGTTTTTAGGTTTGGTGAAAGTTTTGATTGGGCGAAGATTCACAGTCTCATTGTTAGGGAACGTCGCAGATTCGAAGATGGATTGCCCATTTATGCTTACCGGAGGGAAATTCTTCAGCAGATACAAAATCAACAGATAACGGTGTTGATTGGAGAGACTGGTTCCGGGAAGAGTACTCAGATAGTGCAGTTTCTTGCGGATTCCGGCATTGGGGCTGATGAGTCAATTGTGTGCACCCAGCCTCGCAAGATTGCTGCCAAGTCATTGGCGCAAAGGGTCCAGGAAGAAAGTAGTGGATGTTATGAAGAAAGTTCAATCCAGTGTTATTCTACATTTTCATCCGGTGACATGTTTGGTTCCAGGATAGCATTCATGACAGATCACTGTTTATTGCAGCAGTACATGAGTGATAGGAATTTGTCCGGGGTCTCGTGTATCATTGTTGACGAGGCTCATGAAAGGAGCTTAAATACTGATCTACTGTTGGCGTTGATAAAGAATTTACTTTGTAAGAGGGTTGACATGCGGCTTATCATCATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGATTATTTCTATGGTTGTGGAATTTTTCACGTGGTTGGGAGAAACTTCCCTGTGGAGATGAGATATGTTCCTGCTGACTATGGAGAACATTCTGGTTCTGCTGTTGTGGCGTCATACGTTTTTGATGTTGTCAAAATGGCAACCGAGATTCATAAAACAGAAAAAGAAGGAACTATTCTCGCCTTTCTGACCTCACAGTTAGAAGTAGAATGGGCATGCGAAAATTTTAAAGGCCTATCTGCAGTTGCTCTGCCCTTGCATGGGAAACTTTCGCCTGAAGAGCAATTTCATGTTTTCCAGAACTATGCTGGAAAAAGGAAAGTGATATTTTCGACGAATCTTGCAGAGACATCAATTACAATTCCTGGTGTTAAGTATGTGATCGATTCTGGGTTGGTTAAAGATTGCCGATTTGATCCTTGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAACCAAAGGGCAGGTCGTGCTGGGAGGACCGAGCCTGGCTGGTGCTATAGGATGTACTCAGAAGCTGATTATCAGTCCATGGAGCTAAATCAAGAACCTGAGATTCGAAGGGTTCATCTTGGTGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAAAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGCCCTAGCTCCATTGAGATGGCGATCAGGAATCTAATTCAATTAGGATTTGTTAAAGTGAACAATAATGTTCATGAACTAACTTATGACGGTAGGTACTTGGCAAAAATGGGGATTGAACCTAGGCATGGTAAACTTATCCTTGGCTGTTTCCAACTTGCTTTGGGTAGAGAAGGCATTGTCCTTGCAGCCATGATGCCCAATGCTAGTAACATATTTTGCAGATTTGGTAATGAAGGTGATAAACAAAGATCTGATTGTCTCAAAGTACAATTTTGTCATTCCGATGGTGACCTTTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGCTATACCTCAAGATAGGAGGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATGTATGAGGAGATGCCGTGACACAGTTTTGGAGTTAGAATCGTTCCTCGAGCGTGAACATGGATTTGTTGTTCCAAGTTACTGGCGTTGGGACCCCCATAAGCCTTCTGTTCATGATAAGAATATGAAAAAGGTTATACTGTCCTCACTTGCTGAAAATGTAGCCATGTTCTCTGGACGCAATCAGCTTGGTTATGAAGTAGCACTAACTGGACAACATGTTCAACTCCATCCATCTTCGTCCTTGCTTGTATTTGCTCAGAGGCCTAGTTGGGTAGTTTTTGGTGAGCTTCTTTCAGTTTCTAATGAATATTTGGTCTGTGTGAGTGCTGTTGACTTTGAATCATTAAACAGCCTTCAACCTCGTCCCTTGTTTGATGTATCCAAGATGGAAGAGCGGAAGTTGCAAATGAAGACACTGACTGGTTTTGGCACTGTTCTTCTAAAGAGATTTTGTGGGAAAGGCAACAGTAATTTGCTTGGTCTTGTTTCACATATTAGGAAAGCTTGTATGGATGAAAGAATCTTTGTTGAAGTGAATGTTGACGAGAATCTCATCAACTTATATGCTGCTTCACATGATATGAATACAGCTAGTATGTTGGTGAATGATGTTTTAGAAGACGATAAAAAGAGGTTACGTGCTGAATGTATGGAAAGATGTTTGTATCATGGGTCTGGTTCCTCATCACCTGTGGCCTTGTTTGGGTCTGGTGCCGAGATAAAGCATTTGGAACTTGAGAAGCATTCTTTGAGTGTTGAAGTGTCTCACCCAAACATAAATGCAATTGATGATAAGGAGCTCCTGATGTTTTTTGAGAAGAATACCTCAGGTTGTATATGTGCTGTGTACAAGTTCCAAGGCATGGTGAAGGATGCTGATGATAGAGAAAAGTGGGGCAAGATAACATTTTTGTCCCCTGATGCTGCCAAAAGAGCTGCTGAGCTGAATGGAGAAGAGTTTTGCGGCTCACCCTTGAAAATACTTCCTTCACAATCAGCTATGGGAGGGGATAAAACATTTTCATTTCCTGAAGTTAAAGCAAAAATATATTGGCCTCGTAGGCCTAGCAAAGGATTTGGCATAGTTAAATGTGATAAAAATGATGTCAATTTCATCTTGAGAGATTTTTATAACCTTGCAATCGGAGGGAGGTATGTTCGCTGTGCACCCAGTAATAAGTCTATGGATGGTATTATGATAAGTGGGCTTGACAGAGAACTTTCAGAAACTGAAATTTTAGATGTACTGAGAACTGCTACAAGTAGAAGGATTCTGGACTTTTTCGTGGTGAGGGGAGATGCTGTTGGAAATCCACCATGTAGTGCCTGCGAAGAGGCACTCTATAAAGAAATTTCCCCCTTAATGCCTAAAAAAAATTCTCACATTAGTTCTTGCCGCATTCAGGTATTTCCAGCTGAGCCGAAGGATTCTTTCATGAGAGCTTTAATTAATTTTGATGGAAGATTGCATTTAGAGGCAGCAAAAGCTTTGGAGAAAATTGAAGGAAAGGTGTTGCCCGGATGTCTTTCATGGCAGAAGATAAAGTGTGAGCAGTTGTTTCACAGCTCCTTGATATTTCCTGCTCCAGTCTATCACGTGATTAGGGAACAACTGGAAAAAATACTTGCAAGCTTCAACAATTTAAATGGTCTTGAGTGGAACTTAAACAGGACTGCTACCGGCTCCCACCGTTTGAAGATAACAGCCAATGCCACAAAGACAGTGGCAGAAGTTAGGAGACCTCTGGAAGAACTGTCTCGAGGAAAAATCATTGAGCACGACAGCCTCACCCCTGCAGCTCTACAGCTCATGTTGTCCAGAGATGGCATTAATCTTAAATGCTCAATACAGCAAGAGACTACAACTTATATTATTTTTGACAGGCACAACCTGAACTTACGGATTTTTGGTTCGCCGGACAAGATTGCTTTGGCTCAGCAGAAATTAATTCAATCTCTATTGTCCATCCATGAAAAAAAGCAGTTAGTAATACCTCTGAGAGGAAGGGACCTACCTTCTGACTTAATGAAGCAAGTGGTTAGGAATTTTGGGCCAGATCTTCATGGACTAAAAGAGAAGGTACCTGGAGCTGATCTTAAATTGAACACACGCCAACAGATGATCTTTCTTCATGGTAACAAGGAGTTGAAACCGAGAGTAGAGGAAATAACTCTAGAGATTGCCCGTTCAGGCCATCATTTAGTTGAGGGACTTGACACGGGACCCAGTTGCCCAATTTGCTTGTGTGATGTTGAGCATGGATATCAACTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATATGTTGCGCTCACAAGGGCTGTGGAGAGCCTATTCTGCTTGCAGATTTCAGAACTCTCCTGTCAAATGATAAGTTGGATGAACTTTTCAGGGCATCTTTGGGAGCTTTTGTAGCTTCGAGCTCAGGAAGTTATAGGTTTTGCCCGTCTCCTGACTGCCCCTCAATTTATCGAGTTGCAGATCCCGACACAGCTAGTGAGCCATTTATTTGTGGGGCATGTTATTCCGAGACTTGTACCAAGTGCCACATAGAGTATCATCCATACCTTTCATGCGAGAGATACCGAGAGCTCAAGGATGACCCGGACTCATCTCTGAAGGAGTGGTGTAAAGGGAAAGAACAAGTCAAGAGCTGTTTTGCTTGTGGGCAAATAATTGAGAAGATAGATGGGTGCAATCACGTTGAGTGCAAGTGCGGGAAGCATGTCTGCTGGGTTTGCTTGGAAATCTTCACAAAAAGTGATGAATGCTATGATCATTTGAGAACTATACACATGACCATATAA 5190 0.4274 MKKTFPPNYNPHYHRQPPHCPVYHHRKPGFHSNHRVDRPPERNPPHRPPNFILKLHLGRRSLCRDDVECLIGKCKPNPDNFLFYPCDGVAAILNFIQWTDARDAVVWFWESRLSEEHDFTPELISNVMVPSDRVELEGSLRRVFVSYVKELMEGKEVKRWVEEWDRLSKEIASVVSLLGKPFPIRVQNQKIQRKKGLVDEKSLVERRLKEFEFAMECILQHLGESNNVECGGDFVPVFRFGESFDWAKIHSLIVRERRRFEDGLPIYAYRREILQQIQNQQITVLIGETGSGKSTQIVQFLADSGIGADESIVCTQPRKIAAKSLAQRVQEESSGCYEESSIQCYSTFSSGDMFGSRIAFMTDHCLLQQYMSDRNLSGVSCIIVDEAHERSLNTDLLLALIKNLLCKRVDMRLIIMSATADAKQLSDYFYGCGIFHVVGRNFPVEMRYVPADYGEHSGSAVVASYVFDVVKMATEIHKTEKEGTILAFLTSQLEVEWACENFKGLSAVALPLHGKLSPEEQFHVFQNYAGKRKVIFSTNLAETSITIPGVKYVIDSGLVKDCRFDPCSGMNVLKVCWISQSSANQRAGRAGRTEPGWCYRMYSEADYQSMELNQEPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSPSSIEMAIRNLIQLGFVKVNNNVHELTYDGRYLAKMGIEPRHGKLILGCFQLALGREGIVLAAMMPNASNIFCRFGNEGDKQRSDCLKVQFCHSDGDLFTLLSVYKEWEAIPQDRRNKWCWENSINAKCMRRCRDTVLELESFLEREHGFVVPSYWRWDPHKPSVHDKNMKKVILSSLAENVAMFSGRNQLGYEVALTGQHVQLHPSSSLLVFAQRPSWVVFGELLSVSNEYLVCVSAVDFESLNSLQPRPLFDVSKMEERKLQMKTLTGFGTVLLKRFCGKGNSNLLGLVSHIRKACMDERIFVEVNVDENLINLYAASHDMNTASMLVNDVLEDDKKRLRAECMERCLYHGSGSSSPVALFGSGAEIKHLELEKHSLSVEVSHPNINAIDDKELLMFFEKNTSGCICAVYKFQGMVKDADDREKWGKITFLSPDAAKRAAELNGEEFCGSPLKILPSQSAMGGDKTFSFPEVKAKIYWPRRPSKGFGIVKCDKNDVNFILRDFYNLAIGGRYVRCAPSNKSMDGIMISGLDRELSETEILDVLRTATSRRILDFFVVRGDAVGNPPCSACEEALYKEISPLMPKKNSHISSCRIQVFPAEPKDSFMRALINFDGRLHLEAAKALEKIEGKVLPGCLSWQKIKCEQLFHSSLIFPAPVYHVIREQLEKILASFNNLNGLEWNLNRTATGSHRLKITANATKTVAEVRRPLEELSRGKIIEHDSLTPAALQLMLSRDGINLKCSIQQETTTYIIFDRHNLNLRIFGSPDKIALAQQKLIQSLLSIHEKKQLVIPLRGRDLPSDLMKQVVRNFGPDLHGLKEKVPGADLKLNTRQQMIFLHGNKELKPRVEEITLEIARSGHHLVEGLDTGPSCPICLCDVEHGYQLEGCGHLFCRLCLVEQCESAIKNQGSFPICCAHKGCGEPILLADFRTLLSNDKLDELFRASLGAFVASSSGSYRFCPSPDCPSIYRVADPDTASEPFICGACYSETCTKCHIEYHPYLSCERYRELKDDPDSSLKEWCKGKEQVKSCFACGQIIEKIDGCNHVECKCGKHVCWVCLEIFTKSDECYDHLRTIHMTI 1729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03298 1729 FunFam RBR-type E3 ubiquitin transferase 637 743 - -
Trre6g03298 1729 ProSitePatterns Zinc finger RING-type signature. 1537 1546 IPR017907 -
Trre6g03298 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1518 1597 IPR013083 -
Trre6g03298 1729 SMART ha2_5 654 750 IPR007502 GO:0004386
Trre6g03298 1729 SMART helicmild6 496 594 IPR001650 -
Trre6g03298 1729 CDD BRcat_RBR 1603 1656 - -
Trre6g03298 1729 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 441 613 - -
Trre6g03298 1729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 772 IPR027417 -
Trre6g03298 1729 ProSitePatterns Zinc finger C2H2 type domain signature. 1705 1726 IPR013087 -
Trre6g03298 1729 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 247 440 - -
Trre6g03298 1729 PANTHER ATP-DEPENDENT RNA HELICASE 256 900 - -
Trre6g03298 1729 CDD SF2_C_RHA 442 602 - -
Trre6g03298 1729 ProSiteProfiles TRIAD supradomain profile. 1517 1725 IPR044066 -
Trre6g03298 1729 SMART ibrneu5 1654 1718 IPR002867 GO:0008270
Trre6g03298 1729 SMART ibrneu5 1588 1653 IPR002867 GO:0008270
Trre6g03298 1729 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 380 389 IPR002464 -
Trre6g03298 1729 Pfam DEAD/DEAH box helicase 270 425 IPR011545 GO:0003676|GO:0005524
Trre6g03298 1729 Pfam Helicase conserved C-terminal domain 475 593 IPR001650 -
Trre6g03298 1729 CDD Rcat_RBR_DEAH12-like 1676 1726 - -
Trre6g03298 1729 Gene3D - 616 659 IPR042035 -
Trre6g03298 1729 SUPERFAMILY RING/U-box 1603 1658 - -
Trre6g03298 1729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 438 IPR014001 -
Trre6g03298 1729 Gene3D - 1649 1727 - -
Trre6g03298 1729 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 819 894 IPR011709 -
Trre6g03298 1729 Gene3D - 441 613 IPR027417 -
Trre6g03298 1729 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1649 1727 - -
Trre6g03298 1729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 468 634 IPR001650 -
Trre6g03298 1729 SMART ultradead3 262 447 IPR014001 -
Trre6g03298 1729 Pfam Helicase associated domain (HA2) 655 749 IPR007502 GO:0004386
Trre6g03298 1729 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 616 659 - -
Trre6g03298 1729 SUPERFAMILY RING/U-box 1520 1594 - -
Trre6g03298 1729 Gene3D - 248 440 IPR027417 -
Trre6g03298 1729 CDD DEXHc_RHA-like 283 437 - -
Trre6g03298 1729 SUPERFAMILY RING/U-box 1675 1723 - -
Trre6g03298 1729 ProSiteProfiles Zinc finger RING-type profile. 1521 1563 IPR001841 -
Trre6g03298 1729 SUPERFAMILY RNA-binding domain, RBD 1075 1193 IPR035979 GO:0003676
Trre6g03298 1729 CDD RRM_SF 1039 1104 - -
Trre6g03298 1729 Pfam IBR domain, a half RING-finger domain 1597 1653 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03298 Trre-Chr6 31463966 31470306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03298 1536 1714 C3H Transcription Factor Family AT2G31770 25.000 2.28e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03298 K12818 - gmx:100810008 2623.97