Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03291 ATGGGGCTCTCAAACTTTCCCTATGCAGCAGAAGGGGTTGTACCTGTTCTTGTAATGAACACAGTTCTATCAATGGTACTATTAAAGAACATGTTCAGATCCATGCTTCAAGTAGTTGGTTGCACATCATCAATCACTAATTCTCCAAATATTGATGAACAAGAAGAAGAAGAGATTAGTAATAATTCAAGGGAAAGGAGGGTGTCAATAACACATTACAAGTCCTTGTGCTACAACAGGACAAACATAGGTAGAAGTCCTATGTTAGAGTGTTGTGTGTGTTTGTCTGGTTTTGAAGCAAATCAAGAGGTTAGTGAGTTGCCTTGCAAGCATTTCTTCCATAGAGGTTGCTTAGATAAATGGTTTGATAACAAACACACTTCATGTCCTTTATGTCGTTCTATGGACTAA 411 0.3796 MGLSNFPYAAEGVVPVLVMNTVLSMVLLKNMFRSMLQVVGCTSSITNSPNIDEQEEEEISNNSRERRVSITHYKSLCYNRTNIGRSPMLECCVCLSGFEANQEVSELPCKHFFHRGCLDKWFDNKHTSCPLCRSMD 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03291 136 SMART ringv_2 90 133 IPR011016 GO:0008270
Trre6g03291 136 PANTHER - 1 135 IPR044249 -
Trre6g03291 136 SUPERFAMILY RING/U-box 90 134 - -
Trre6g03291 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 136 IPR013083 -
Trre6g03291 136 Pfam Ring finger domain 90 133 IPR001841 -
Trre6g03291 136 SMART ring_2 91 132 IPR001841 -
Trre6g03291 136 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03291 Trre-Chr6 31422220 31422630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03291 1 134 C3H Transcription Factor Family AT2G04240 32.903 1.19e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03291 K16285 - gmx:100811790 188.734