Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03280 ATGTTAGGAGAAGAAGGAAAAGAGAAACCCTCCTCTATCAGGAGAACCTATTCACGTTCAGTTTCATGGACAGATCGTTCTCCGAGTAGCCGTAAACCGCCGCCTGGAAATAGTAAACCACGACCACTTTTACCACCTCTTCAGCCTCTCTCAATCAATAAACGTAGCGTCGAAGAATGGCCAAGTGCTGGATCTGATGATCTTGGTGTTTGGCCTCTTCCACAAACTCCAAGAGGGTCTATTACAATCAATGAACAACCTACCAAAGATTTTCAGTTCAAAAGGGATAAATTAGCTTTCTTTGACAAAGAGTGTTCCAGAATTGCAGAACATATTTACTTGGGAAGTGACACGGTTGCTAAAAACCATGAACTTCTCAGACAGAAAGGAATAACTCATGTGCTTAACTGTGTTGGATTTGTTTGTCCTGAGTATTTCAAAAGTGATTTTGTTTATAAAACACTTTGGTTGCAGGATAGTCCAACAGAGGATATAACATGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAACAAGGCGGTCGTGTTCTTGTTCATTGTTGTCAAGGGGTTTCTCGATCGACCGCTTTGGTGATTGCTTATCTCATGTGGAGGAAAGGACAGAGTTTTGAAGATGCTTTTCAGTTTGTGAAAACTGCTAGAGGAGTCACAAATCCAAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGTGTACATGCTATGCCTGCAAGTCCTAGTTCTATTCTAAGGATGTATCGAATGGCTCCTCACTCTCCTTATGACCCTCTTCATCTTGTTCCTAAGATGGTTAACCAACCAGGTTCATTAGCACTTGATTCTCGCGGTGCTTTCATTGTTCATGTTCCTTCTGCTATTTATGTGTGGATTGGGAAAAATTGTAACTTGTTTATGTCATGCAATGCAAAGAGTGCTGCTTTTCAGGTCGTGCGTTACGAGGGAGTAAAGGGTCCAATTCTGAGCATCCGTGAAGATCAAGAATCAACCGAGTTTTGGGTTGCTCTTTCTGACGAGCAGCGTTTGTCAGATAATTCTGATAAACAGCTGGTGGTATTACCTTCTGAAAAGATGGAGATTGCTAGTCTAAGAAAAGTTGATGCTTATGATTTGGATTTCGAGATTTTCAACAAGGCAGTTTCTGGTGGGGTTGTTCCGCCTTTTTCTGTAGCTAATGCTGGATCAGAAACTTGTCTTCCTGCTAAAGAACATGGTTGGGCAAGATTGAGGAAGAAATTTGCCAGTGGTGACATGAAAGAAATCTTAACATCCCCTAAGTGGAAGTGTGATGTGATTATGGAGGAAGAAAAACAAGATTTTGTAGCTGATGATGATGATCATCATCCTTTGTCAGCTTCACCATCATCAAATAATCCCAGTGACTGTGGGTCCCCGGATTCCTTTGAATGTTATCCAACCAGCTTGAGTAAGGCAAAAGATACTGTTGAAGACATGGACTTGTCCGAATCTGATCATGGCGTTGCTTCTTTGCTGCCACTATCTCCTTCTTTTCCTTGTTTTCTAAGCAGCAGCCCAAAATTCAATTACAAATCGCCAACACTTTCACCTTCAAGTTCTGACTATGCAAGTTCATTTACATTTTCACCTTCCTCTACCAATTGGTCAGACCTGTCATTCATGTCTTCTAGGCAGCCGTCACCGTCTGGCCATGAATCAGTTGAACCTTTTTATGTTAAAGATGTGTCTTTCTCCACAAGTTCCTCTTTACTTAACAAAGAAGTTCTCTCTTCGCCTTCAGAGTCATTTTCGACTGATCACACCTTGGGAGGGGAAAACTCCTATTTGCCATCATCGAAAGGATCTTTTCTCTCTATTGCAGCACGAAGAGGGAGTCATATACCGCCTCCGATGTTGCTAACCTCTGTCAATGAATCCTCTAAAGTTCGTAAGAACCTGGAGGAATACACCTACTAA 1968 0.4162 MLGEEGKEKPSSIRRTYSRSVSWTDRSPSSRKPPPGNSKPRPLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSITINEQPTKDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITCILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARGVTNPNMGFACQLLQCQKRVHAMPASPSSILRMYRMAPHSPYDPLHLVPKMVNQPGSLALDSRGAFIVHVPSAIYVWIGKNCNLFMSCNAKSAAFQVVRYEGVKGPILSIREDQESTEFWVALSDEQRLSDNSDKQLVVLPSEKMEIASLRKVDAYDLDFEIFNKAVSGGVVPPFSVANAGSETCLPAKEHGWARLRKKFASGDMKEILTSPKWKCDVIMEEEKQDFVADDDDHHPLSASPSSNNPSDCGSPDSFECYPTSLSKAKDTVEDMDLSESDHGVASLLPLSPSFPCFLSSSPKFNYKSPTLSPSSSDYASSFTFSPSSTNWSDLSFMSSRQPSPSGHESVEPFYVKDVSFSTSSSLLNKEVLSSPSESFSTDHTLGGENSYLPSSKGSFLSIAARRGSHIPPPMLLTSVNESSKVRKNLEEYTY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03280 655 CDD DSP 105 239 - -
Trre6g03280 655 MobiDBLite consensus disorder prediction 33 47 - -
Trre6g03280 655 ProSitePatterns Tyrosine specific protein phosphatases active site. 188 198 IPR016130 GO:0016311|GO:0016791
Trre6g03280 655 MobiDBLite consensus disorder prediction 15 32 - -
Trre6g03280 655 SMART dsp_5 104 243 IPR020422 GO:0006470|GO:0008138
Trre6g03280 655 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 224 IPR000387 GO:0016311|GO:0016791
Trre6g03280 655 MobiDBLite consensus disorder prediction 1 83 - -
Trre6g03280 655 Pfam Dual specificity phosphatase, catalytic domain 112 242 IPR000340 GO:0008138|GO:0016311
Trre6g03280 655 Gene3D Protein tyrosine phosphatase superfamily 82 246 IPR029021 -
Trre6g03280 655 Gene3D Severin 257 355 IPR029006 -
Trre6g03280 655 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 246 IPR029021 -
Trre6g03280 655 SUPERFAMILY Actin depolymerizing proteins 251 350 - -
Trre6g03280 655 MobiDBLite consensus disorder prediction 454 476 - -
Trre6g03280 655 ProSiteProfiles Dual specificity protein phosphatase domain profile. 104 246 IPR020422 GO:0006470|GO:0008138
Trre6g03280 655 PANTHER MKPA PROTEIN 11 649 - -
Trre6g03280 655 MobiDBLite consensus disorder prediction 462 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03280 Trre-Chr6 31200736 31203582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03280 37 140 Protein tyrosine phosphatase (PTP) family AT3G55270 52.991 2.98e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03280 - - lja:Lj6g3v0574850.1 914.835