Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03279 ATGGATTACTCTACGGAGTTTTCTATGGATCGACGTCCTCGTAAAAGGGCTAAATTGGCTTGGGAACTTCCTCAAACCCACTCAAAGGCTCATTCGGGGATTTATTGTGGACAAGAGTTTGCTAATGCGACAACAAGCTATGGAACACTGAGGGTACTTCCTGACCATGCTGGTCTTTCGTTAAAGGGATTGGCTGAAAGAGGTTCCCCTCAATGGCGAGATGATGACAAAGATGGACATTACATGTTTGTGCTTGGAGAAAATTTAACTTCTCGGTATAAGATCCTCAGGAAAATTGGTGAAGGGACTTTTGGTCAGGTTTTGGAATGCTGGGATAGAGAAATGAGGGAACTGGTTGCTATAAAAGTTGTGAGGAGTGTTAAGAAATATCGTGAAGCAGCAATGTTAGAAGTTGATGTGCTTCAGTTGATTGGGAAGTATGACAGGACTGGTAGCCGATGTGTTCAAATACGCAACTGGTTTGACTATCGAAACCATATTTGTATTGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTCCGGAAGAACAACTATCGCCCGTTTCCGGTTGATCTTGTCCGTGAGCTAGGAAGACAATTGTTGGAAAGTGTAGCATTCGTGCATGATCTGCGCCTCATCCACACTGACTTGAAGCCTGAAAATATACTTTTTATTTCCCCAGAGTATGTAAAAGTGCCTGACTACAAGGTCATGTTCCGGTCACCAAAAGAGGGAACCTCTTATAAGAGACTGCCAAAGTCAAGTGCTATTAAGGTTATTGATTTTGGTAGTACGGCCTATGAGCACCAAGATCACAACTATATTGTCTCTACTCGGCATTATAGGGCACCTGAGGTTATTCTTGGACTTGGTTGGAATTTTCCTTGTGACATATGGAGTATTGGTTGCATTTTGGTTGAGTTGTGTTCGGGAGAAGCTTTGTTTCAGACGCATGAAAATTTAGAGCATCTAGCCATGATGGAGAGGGTTTTAGGCCCAATACCTCAGCACATGTTGAAACGAGTAGACCGCAATGCAGAGAAGTATGTCAGAAGGGGTAGACTGAACTGGCCCGAAGGAGCAGTCTCTCGAGAAAGCATCAAAGCTGTCATGAAACTACCCCGTCTTCCTAATCTGGTGATGCAGCATGTGGATCACTCAGCCGGGGAACTTCTTGATCTCTTGCAGGGTCTACTTCGGTTTGACCCCATCAGCAGAATGAAGGCTCACGAAGCACTCAGGCATCCCTTTTTTACCGGGGAGCATTACCAGAGGTATTAA 1287 0.4413 MDYSTEFSMDRRPRKRAKLAWELPQTHSKAHSGIYCGQEFANATTSYGTLRVLPDHAGLSLKGLAERGSPQWRDDDKDGHYMFVLGENLTSRYKILRKIGEGTFGQVLECWDREMRELVAIKVVRSVKKYREAAMLEVDVLQLIGKYDRTGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVRELGRQLLESVAFVHDLRLIHTDLKPENILFISPEYVKVPDYKVMFRSPKEGTSYKRLPKSSAIKVIDFGSTAYEHQDHNYIVSTRHYRAPEVILGLGWNFPCDIWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPIPQHMLKRVDRNAEKYVRRGRLNWPEGAVSRESIKAVMKLPRLPNLVMQHVDHSAGELLDLLQGLLRFDPISRMKAHEALRHPFFTGEHYQRY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03279 428 SUPERFAMILY Protein kinase-like (PK-like) 80 425 IPR011009 -
Trre6g03279 428 Gene3D Phosphorylase Kinase; domain 1 80 173 - -
Trre6g03279 428 ProSitePatterns Protein kinases ATP-binding region signature. 99 129 IPR017441 GO:0005524
Trre6g03279 428 CDD PKc_CLK 80 420 - -
Trre6g03279 428 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 8 423 - -
Trre6g03279 428 Pfam Protein kinase domain 93 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03279 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Trre6g03279 428 SMART serkin_6 93 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03279 428 FunFam Serine/threonine-protein kinase AFC2 169 420 - -
Trre6g03279 428 ProSiteProfiles Protein kinase domain profile. 93 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03279 428 Gene3D Transferase(Phosphotransferase) domain 1 147 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03279 Trre-Chr6 31188008 31191566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03279 84 420 Core Cell Cycle Gene Families AT1G76540 24.571 7.99e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Trre6g03279 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03279 K08287 - qsu:112037155 746.888