Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03266 ATGGGAAACAAAGGTGGATTTTTCCGTTATGCAGATGGATTTGACAAGTTGCTATTATTCTTTGGAACTTTGGGTTGTATTGGAGATGGTATACAAACTCCACTCACTATGCTTGTTCTTGGTGATTTGATAGATGATTATGCTCGTGGTGGTTCTGAACATACTGTATCCATTCATAATATCAACAAGTATGCTCTCAAGCTAGTTGGTGTTGCCATTGGAGTTGCTTTCTCTGCTTTTATCGTAGGAGTATGTTGGACAAGAACAGCAGAAAGACAAACTTCGCGGATGAGAATTGAATATCTTAAATCAATCCTAAGGCAAGAAGTTGGTTTCTTTGACAAGCAAAGTAACTCTTCCACAACATTCCAAGTAATTGCAACCATTACTTCTGATGCTCAAACAATCCAAGATACCTTGTCTGATAAGGTACCTAATACTCTAGTTCATCTCTCAGCATTTTTCTCTAGCTTTATAGTGGCACTATTCCTCTCTTGGAGACTTGCAGTAGCTGCTTTTCCATTTTCAATTATGATGATCATGCCAGCACTCATATTTGGAAATTCTATGAAAGAGATTGGTGGTAAAATGAAGGACGCTTTCGGAGTTGCTGGTAGTATAGTAGAACAAGCAATCTCATCGGTTCGAACTGTTTATTCGTATGTAGGTGAGAAGCAAACACTGAAAAGGTTTAGTTCTGCTCTTGAAACATGTATGCAGCTTGGCATAAAACAAGGTCAAACAAAGGGAGTGGTTATTGGAAGTTTTGGATTACTATATGCTACTTGGGCCTTCCAATCTTGGGTTGGAAGTGTTCTGGTTAGGACCAAAGGAGAAAAGGGTGGCCATGTGTTTTGTGCCGAAATATCCATTATTTGGGGTGGATTGTCTCTGATGAGTGCACTTCCAAATCTGGCTTCCATGTTAGACGCGACAGTAGCAGCTACTCGGATTTTCGAGATGATTGACAGAAAGCCAACCATAAACTCTACCAAAGAAAAAGGAAGGATTTTGAAGCATACAAGAGGAGAGATTACATTTAAAGAGGTTGAGTTTAGTTACCCTTCAAGGCCAGATACACCGATTCTCCAAGGACTCAATCTTAAAGTTCAGGCATGTAAAACAGTAGGACTAGTTGGAGGAAGTGGTTCTGGCAAATCTACTATAATCTCTTTACTTGAAAGATTCTATGAGCCGAAAAGTGGTGAGATTTTACTCGATGGACATGATATAAAGAGACTGCACCTTAAGTGGTTTAGGTCCCTGATAGGATTGGTAAATCAAGAGCCAATTCTCTTTGCAACATCCATAAGAGAGAACATTTTATTTGGAAAGGAAGGAGCTTCAATGGAAGATGTAATAACCGCAGCGAAAGACGCAAATGCACATGATTTCATTGTTAAACTTCCTGATGGATATGAAACTCAAGTAGGACAACTAGGAGCTCAATTATCTGGAGGACAAAAGCAAAGGATTGCTATTGCAAGAGCTTTAGTAAGAGACCCTAAAATCATACTACTTGATGAAGCTACAAGTGCTTTGGATTCACAATCTGAAAGAATAGTACAAGATGCACTTGACTTGGCTTCTAGAGGTAGAACAACGATCATCATTGCTCACCGCCTTTCCACAATTCGTAAAGCTGACTCCATAGTAGTTCTTCAATCAGGAAAAGTGGTTGAATGTGGTTCACACAATGAGCTACTTCAACTAAACAATGGACAAGGTGGGATTTACACCAAAATGCTTCATTTGCAACAAATAAGTCAAAATGAAAATGCACAGCATCAAATAAACAAGAGTCCTCATGCAATGGAAAATCAAATAGCAAGTTCACATTCAAGCTGGCAAAGTACTCCAATTCGTCATGAATTTAGCACCACACAACCATTTAGTCCTATATATTCAATCAGTGCTATAGGCTCTAGCTTTGATGATGACTTCAGCAGTGAAAACTTGGAGAAACCTTACAGTTCCAACATCTCGCACTGGCGTTTACTACAAATGAATGCTCCTGAATGGAAGCATGCTTTGTTTGGATGCTTAGGTACCATTAGCTCAGGAATGTGCCAGCCATTTTATTCCTATTGCTTAGGGATAGTTGCTTCTGTTTACTTCATAGATGATAACTCTCTCATCAAATCACAAATCAGGTTATACTCAATCATCTTCTGCTGCATAGCTGTTGTGAACTTCATCTCAGGCATCATTCAACATTACAATTTTTCTATCATGGGAGAGCGTTTGCTGAAAAGGGTGCGAGAGAATTTGCTAGAGAAGGTGTTGACCTTTGAGATAGGATGGTTTGATCAAGATGAGAACACAAGTGCAGCAATCTGCGCGCGTTTAGCTACCGAAGCCAATTTGGTTCGATCCCTCGTTGCAGACCGAATGTCGTTGTTAGTTCAGGTTTCCGTAACTGCTTCGCTGGCTTTTGTACTCGGTTTAATCGTTACATGGAGGGTAGCTATTGTCATGATAGCTATGCAGCCTTTGGTGATTGCATGTCTCTATTCAAAAACCGTTCTCATGAAGAGTATGTCAGGCAAAGCGAAAAGTGCTCAAAGAGATGCTAGTCAATTAGCAATGGAAGCTACTACCAACCACAGGACTATCGCTGCATTCTCTTCCGAGAAAAGGATACTAAATTTGTTCAGAACTGCTATGGATGGTCCAAAGAAGGAAAGTATCAAGCAATCATGGATTTCAGGTTCTATACTGTCTATGTCACAATTCATGATGACAGCATCTATAGCTTTGACTTTTTGGTATGGGGGCATACTATTAAATCATAAACTCGTCGAATCAAAGCAACTCTTACAAGTTTTCCTGATTTTGATGGGAACTGGTAAACAAATTGCTGATACAGGAAGCATGACTTCTGACATAGCTAAAAGTGGAAAAGCCATTAGTTCAGTATTTGCAATACTTGATAGGAAAACTGAGATTGAACCTGAAGATACTAGACACAGAAAGTTCAAAAAGACTTTGAAGGGCGATATAAAACTGAAAGACGTGTTTTTCTCATATCCTGCAAGGCCAGACCAAATGATTCTCAAGGGCTTAAATCTTGAGATTGAAGCTGGCAAAACAGTAGCATTAGTGGGACAAAGTGGCTCAGGAAAATCTACCATCATTGGCTTAATTGAAAGATTTTATGACCCTATTAAGGGTTCAATATTCATAGACAATTGTGACATTAAGGAACTTCATTTGAAAAGTTTGAGATCACATATTGCATTGGTGAGTCAAGAACCTACCCTCTTCGCAGGAACCATACGCGACAACATTGTATATGGTAAGGAAGATGCATCAGAAGATGAAATACGAAGGGCTGCACGTCTTGCAAATGCTCATGAATTTATAAGTTCAATGAAAGATGGGTATAATACATACTGTGGAGAAAGAGGAGTGCAGCTATCAGGAGGGCAGAAGCAGAGAATAGCGATAGCTCGAGCAATGGTGAAGAATCCATCAATTCTTCTGTTAGATGAGGCAACAAGTGCTCTTGACAGTGTGTCAGAGAATTTAGTACAAGAAGCTTTGGAGAAAATGATGGTTGGAAGAACATGTGTAGTTATAGCTCATCGTTTGTCAACTATACAAAGTGTTGATTCCATAGCTGTGATTAAAAATGGAAAGGTGGTAGAACAAGGTTCTCACTCACAGTTACTGAACAATAGATCAAATGGGACTTATTACTCTTTAATTAGGCTACAACAGAGTCACTAA 3732 0.3934 MGNKGGFFRYADGFDKLLLFFGTLGCIGDGIQTPLTMLVLGDLIDDYARGGSEHTVSIHNINKYALKLVGVAIGVAFSAFIVGVCWTRTAERQTSRMRIEYLKSILRQEVGFFDKQSNSSTTFQVIATITSDAQTIQDTLSDKVPNTLVHLSAFFSSFIVALFLSWRLAVAAFPFSIMMIMPALIFGNSMKEIGGKMKDAFGVAGSIVEQAISSVRTVYSYVGEKQTLKRFSSALETCMQLGIKQGQTKGVVIGSFGLLYATWAFQSWVGSVLVRTKGEKGGHVFCAEISIIWGGLSLMSALPNLASMLDATVAATRIFEMIDRKPTINSTKEKGRILKHTRGEITFKEVEFSYPSRPDTPILQGLNLKVQACKTVGLVGGSGSGKSTIISLLERFYEPKSGEILLDGHDIKRLHLKWFRSLIGLVNQEPILFATSIRENILFGKEGASMEDVITAAKDANAHDFIVKLPDGYETQVGQLGAQLSGGQKQRIAIARALVRDPKIILLDEATSALDSQSERIVQDALDLASRGRTTIIIAHRLSTIRKADSIVVLQSGKVVECGSHNELLQLNNGQGGIYTKMLHLQQISQNENAQHQINKSPHAMENQIASSHSSWQSTPIRHEFSTTQPFSPIYSISAIGSSFDDDFSSENLEKPYSSNISHWRLLQMNAPEWKHALFGCLGTISSGMCQPFYSYCLGIVASVYFIDDNSLIKSQIRLYSIIFCCIAVVNFISGIIQHYNFSIMGERLLKRVRENLLEKVLTFEIGWFDQDENTSAAICARLATEANLVRSLVADRMSLLVQVSVTASLAFVLGLIVTWRVAIVMIAMQPLVIACLYSKTVLMKSMSGKAKSAQRDASQLAMEATTNHRTIAAFSSEKRILNLFRTAMDGPKKESIKQSWISGSILSMSQFMMTASIALTFWYGGILLNHKLVESKQLLQVFLILMGTGKQIADTGSMTSDIAKSGKAISSVFAILDRKTEIEPEDTRHRKFKKTLKGDIKLKDVFFSYPARPDQMILKGLNLEIEAGKTVALVGQSGSGKSTIIGLIERFYDPIKGSIFIDNCDIKELHLKSLRSHIALVSQEPTLFAGTIRDNIVYGKEDASEDEIRRAARLANAHEFISSMKDGYNTYCGERGVQLSGGQKQRIAIARAMVKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQSVDSIAVIKNGKVVEQGSHSQLLNNRSNGTYYSLIRLQQSH 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03266 1243 PANTHER ABC TRANSPORTER B FAMILY 7 689 IPR039421 -
Trre6g03266 1243 SMART AAA_5 372 558 IPR003593 GO:0016887
Trre6g03266 1243 SMART AAA_5 1028 1214 IPR003593 GO:0016887
Trre6g03266 1243 Gene3D ABC transporter type 1, transmembrane domain 646 987 IPR036640 GO:0005524|GO:0016020
Trre6g03266 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Trre6g03266 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1240 IPR027417 -
Trre6g03266 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Trre6g03266 1243 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524|GO:0016887
Trre6g03266 1243 FunFam ABC transporter B family member 4 335 595 - -
Trre6g03266 1243 FunFam ABC transporter B family member 4 991 1243 - -
Trre6g03266 1243 Pfam ABC transporter transmembrane region 679 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g03266 1243 Pfam ABC transporter transmembrane region 20 276 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g03266 1243 SUPERFAMILY ABC transporter transmembrane region 665 985 IPR036640 GO:0005524|GO:0016020
Trre6g03266 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g03266 1243 SUPERFAMILY ABC transporter transmembrane region 7 326 IPR036640 GO:0005524|GO:0016020
Trre6g03266 1243 Gene3D - 988 1243 IPR027417 -
Trre6g03266 1243 MobiDBLite consensus disorder prediction 592 613 - -
Trre6g03266 1243 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524|GO:0016887
Trre6g03266 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 345 581 IPR003439 GO:0005524
Trre6g03266 1243 Gene3D - 335 587 IPR027417 -
Trre6g03266 1243 CDD ABC_MTABC3_MDL1_MDL2 1001 1240 - -
Trre6g03266 1243 Gene3D ABC transporter type 1, transmembrane domain 7 601 IPR036640 GO:0005524|GO:0016020
Trre6g03266 1243 Pfam ABC transporter 1019 1168 IPR003439 GO:0005524
Trre6g03266 1243 Pfam ABC transporter 363 512 IPR003439 GO:0005524
Trre6g03266 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 318 - -
Trre6g03266 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 586 IPR027417 -
Trre6g03266 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 274 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g03266 1243 CDD ABC_MTABC3_MDL1_MDL2 345 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03266 Trre-Chr6 30812417 30818099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03266 680 1242 Calmodulin-binding Proteins AT2G36910 38.053 1.64e-113 384