Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03265 ATGGGAGAAACCGGTATCATTGCAACCTTAAACCCCACGGCTCAAGAGTTTAACCCAACAAACCACATTCCTCTCACCATCGCCGTCGGCGTTCCCTATCCCTACCCACCCTACGCCGTCACACCTCCGCCGCACCTCTCTCCCATACCAACCCGCTCCATCCTCCTCAGTCCAGTCCCTCCTACCCCTGAATCCATCCTCCGAAAAGATCTCGGAGCGTTCGGCGAAGTCAGAGCCGTCAATACCGATTCCTTCCGTCACGGAATCATAACGGCTCACTTCTACGACCTAAGACACGCTGAAACGGCGTTCACCGCTATTCGTACTCATCATGTTCACTGTGTCTCGTTCTTTAACCCGCTTTCTCATCATCAATTTTACTCAGCTCCTCCGCCGCCGCCGGGACTCGTCGCCGGCGTTCCTCTCTGGGCTCACTACGTTCACGCTGATGCTGAAAATCAAGGAACCCTAGTCCTATTCAACGTTGACGACAACGTTTCCGCTAATCATCTCCGACGAGTTTTCGAACCTTTTGGAGCCATAAAGGAAGTGAGGGACACTGCAGGGAAGAAAAAGAATCAAAGATTTGTTGAATTTTTTGACATAAGAGATGCAGCTAAAGCTATGAATGAAATGAATGGAAAAGAAATTGATGGAAAAAATGTTGCTATTGAGTTTAGTAGACCAAAATTTTTCCATTCAAACAATCCTAATTTTTATGTTTCCAACAAGCCATTTCATTTAAACTTTAATAGTCCACCACCACCTCCTTCGCCGCGGCGTCGATTTGGTCCTTCACCACAATTATCTCCAAAAAGTTTCACATTGAGTCCTAATAGAATTGGTGGTGAAGAGCATTATGGTGCTAAGAGGAACTTTGTTAGGAGTGAAAGTAGAGAGAGCTTTGGAGAAAGAAGCTGGGTTTGGAAGGGGAAGCAAGTAAGGAAGCATGAAGCTCGTTTTTTTATCAAAGAAGATGCCATTGTTGAATCTGATTCTAGAACAACTCTCATGATCAAAAACATACCCAACAAGTACAGTCAGAAGCTGCTGTTGAGTATGTTGGACAACCACTGCAGACACTGCAATGACCAGATAGGCGACGGCGATGATCAACCTCTATCCTCTTATGACTTTGTTTACCTTCCTATTGATTTCAAGAACAAGTGCAACGTGGGATATGGGTTTGTGAATATGACATCTCCGGAGGCAACTCTGAGACTCTACAAAGCCTTCCACCACCAAAATTGGGAGGTCTTTAACTCAAGAAAAATTTGTCAACTCACCTATGCCAGAATTCAGGGTTTGGAAGCATTGAAGGAGCATTTTAAGAACTCAAAGTTCCCATGCGAAATGGAGCATTATCTGCCAGTGGTGTTTTCACCACCTCGAGATGGGAAGAAGAATTTAACAGACCCAATTCCAGTAGTTGGAAACATGATAAGAGTTGGTGCTGCTGCTCTTCCTGTAGATGATGAGATGGAGGGTCGAGTTCGTAGAGTAGATAATGGATGTGGCTGTGCCTGTGATGACACTATCTGCTACAAAAGTGGCGGCATAGGTGATGATGATGATAATACTGATATGAAGTGA 1593 0.4507 MGETGIIATLNPTAQEFNPTNHIPLTIAVGVPYPYPPYAVTPPPHLSPIPTRSILLSPVPPTPESILRKDLGAFGEVRAVNTDSFRHGIITAHFYDLRHAETAFTAIRTHHVHCVSFFNPLSHHQFYSAPPPPPGLVAGVPLWAHYVHADAENQGTLVLFNVDDNVSANHLRRVFEPFGAIKEVRDTAGKKKNQRFVEFFDIRDAAKAMNEMNGKEIDGKNVAIEFSRPKFFHSNNPNFYVSNKPFHLNFNSPPPPPSPRRRFGPSPQLSPKSFTLSPNRIGGEEHYGAKRNFVRSESRESFGERSWVWKGKQVRKHEARFFIKEDAIVESDSRTTLMIKNIPNKYSQKLLLSMLDNHCRHCNDQIGDGDDQPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRLYKAFHHQNWEVFNSRKICQLTYARIQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKKNLTDPIPVVGNMIRVGAAALPVDDEMEGRVRRVDNGCGCACDDTICYKSGGIGDDDDNTDMK 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03265 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 222 IPR000504 GO:0003723
Trre6g03265 530 MobiDBLite consensus disorder prediction 250 281 - -
Trre6g03265 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 229 IPR000504 GO:0003723
Trre6g03265 530 MobiDBLite consensus disorder prediction 250 264 - -
Trre6g03265 530 Gene3D - 148 236 IPR012677 -
Trre6g03265 530 FunFam Terminal EAR1-like 1 287 440 - -
Trre6g03265 530 SMART rrm1_1 156 225 IPR000504 GO:0003723
Trre6g03265 530 Pfam RNA recognition motif 2 334 444 IPR007201 -
Trre6g03265 530 CDD RRM3_EAR1_like 334 435 IPR034458 -
Trre6g03265 530 SUPERFAMILY RNA-binding domain, RBD 156 415 IPR035979 GO:0003676
Trre6g03265 530 PANTHER RNA RECOGNITION MOTIF-CONTAINING 256 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03265 Trre-Chr6 30753246 30756189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03265 157 271 Eukaryotic Initiation Factors Gene Family AT2G23350 31.915 3.21e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03265 - - psat:127082995 753.821