Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03227 ATGGATAATGGTTGCTTTTCTTCGCCTCGACGCGATTTTCCTAATGGTTTAAGAGTTCTTGTTGTGGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTTAAAAAGTGTAATTATGAAGTGACGACGTGTTGCTTAGCAAGACACGCTCTAAGCTTGCTTCGTGAAAGGAAAGACGGATACGATATAGTGATCAGTGATGTAAACATGCCTGACATGGACGGTTTCAAACTTCTTGAGCACGTTGGACTAGAAATGGATCTTCCTGTCATTATGATGTCTGTCGATGGAGAAACAAGCAGGGTGATGAAAGGCGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGCTGCGAAATATATGGCAACATGTATTCCGAAAAAGGATACACGAGGTTAGAGACTTTGAAAATTTTGAAAGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGAACTGTCCGAGGAGGGGAACCTGTTTGCTTTAGAAGATATGACCTCAATGAAGAAAAGAAAAGATTTAGATAACAAACACGACGACAGAGAATTTCTGGATTCATCTTCCTCAAAGAAAGCGAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGTTTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCGTGGCTGAGTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGATAACGAACAAAAATCTTCCCCAAGTGGAATGAAGTATTCTGATTTACCTTCAAAAGATGTAGGAAATTTCAATTTTCCGAACTCAGCAAACAAGCAACAAAACGATGCTTCAATTGACAGATGCAACTATTCAGAAGGAACCTTACAGCACCAGAACATGGAAACTAAAAGTCATGAAGGTAATCCCAAAGGAATTGTTCCACATTCCACCACTGCAGAAAAGGCAAGACCTTTGACTGGTAACATCACTGATGCAAATATTCAACATTTTGCTCCACTCGAATCAGAACGAAAACGTTCAGCGTTTGATTGCACCATGTCAACACCGTATTCTTGGACTGAAATTCCAAAAACACAGCTAAAAAAAGAACAAAAGACAGTTGTTCATCTAGAGGACAACTTCAACTTGTTGCCTTTCCATGGTAAGAAGCATAACATTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCAACTCCCTCTATAACGGAGAAAGATGTCGCTGCTTGTATAGAAACAAAACCTAGGTTTGCTGATTACAAGAAAGAGTATACTAGTTCAGCGAGTTCAATAAGAAGTTCAGTTGACACCTTTCCTTTCCAACCCGGAAACCTTATGATGAATGATCAACCTTCACAACCCATTTCAACTACTAATTTCGGCTTAAAAACACAGTCATCTAATAATCTCTGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTCGGAGGTGAGGCTGCTTCTGCAGCACCTTTGGACGAGGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAGCCGAATATAGGAATGTCCGAGTATTATGATCCAGGGATTCTCACAGAAGTTCCAAATCACTTATATGATTCAGCAGATTATTTAGTAATTGATCAAGGTCTATTCATAGCATGA 1707 0.3884 MDNGCFSSPRRDFPNGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVRDFENFESFESMHLMRNGSELSEEGNLFALEDMTSMKKRKDLDNKHDDREFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSPSGMKYSDLPSKDVGNFNFPNSANKQQNDASIDRCNYSEGTLQHQNMETKSHEGNPKGIVPHSTTAEKARPLTGNITDANIQHFAPLESERKRSAFDCTMSTPYSWTEIPKTQLKKEQKTVVHLEDNFNLLPFHGKKHNIQVDQSQSIASISSTPSITEKDVAACIETKPRFADYKKEYTSSASSIRSSVDTFPFQPGNLMMNDQPSQPISTTNFGLKTQSSNNLCCISDLESYQRNLLFGGEAASAAPLDEDLYFYWHNMNFGQPNIGMSEYYDPGILTEVPNHLYDSADYLVIDQGLFIA 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03227 568 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Trre6g03227 568 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 286 IPR045279 GO:0009736
Trre6g03227 568 CDD REC_typeB_ARR-like 19 133 - -
Trre6g03227 568 SMART REC_2 17 129 IPR001789 GO:0000160
Trre6g03227 568 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Trre6g03227 568 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Trre6g03227 568 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Trre6g03227 568 PIRSF RR_ARR_type-B 2 539 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre6g03227 568 Gene3D - 200 258 - -
Trre6g03227 568 SUPERFAMILY CheY-like 15 141 IPR011006 -
Trre6g03227 568 Gene3D - 17 199 - -
Trre6g03227 568 FunFam Two-component response regulator 195 258 - -
Trre6g03227 568 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Trre6g03227 568 FunFam Two-component response regulator 17 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03227 Trre-Chr6 30143060 30146991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03227 13 265 Response Regulator Gene Family AT2G25180 56.641 4.94e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre6g03227 Response_reg 2.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03227 K14491 - gmx:100797421 893.264