Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03206 ATGTATCTATCATCAGAAAAGCCTCGTCCAATCGATTTCTACAAAGAAGAAGCAAGAGACATGATGATGGAAGTTGTTACCAACGCCGATCTTCCACCACCACCACCACCGCAACACCAACAACAACAACTCCAACCACCACCACCACCGCCGCAAATGATTCTCGCTGCAGAGAGCAGCGGCGAAGACCCTGAGATGGAGATCAAAGCTCCTAAGAAACGAGCTGAAACTTGGGTACAAGATGAGACACGAAGTCTGATTGGTTTTCGAAGAGAGATGGATTCACTTTTCAACACTTCGAAGTCGAATAAACATCTTTGGGAACAAATTTCTGCTAAGATGAGAGAAAAGGGTTTCGATCGGTCACCGACTATGTGTACTGATAAATGGAGGAATCTTTTGAAAGAGTTTAAGAAAGCCAAACATCATGAAGATAGAGGTGGAAGTGGTTCTGGTAAAATGAGTTGTTACAAAGAGATTGATGAGATCTTAAGAGAGAGGAGTAAGTGTGCTCAGTATAAGACTCTTACTCCTTCTTCTAAAGTTGAATCTTCTTACATGCACTTTGCTGATAAAGGTATTGATGATGCCAACATTTCTTTTGGGCCTGTTGAAGCTTCTGGAAGACCAACACTCAATCTTGAAAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTGCCGCAGCTGAAGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAAACACCCGGAAATGGCGGGGAAACTCAGTCTTGTTGTGGAAGGGTTATATCAGTCAAATGGGGCGATTATACAAGACGAATAGGTATTGATGGCACTCCGGAAGCCATCAAGGAGGCCATTAGGGCTGCTTTTAGGTTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGAACAAATTATCAGAAGCATTGACCGTGACATGCCTATAGGAAACTACACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTATGCCTATATGATGAGTCTGACCGTATCCCTGTGCATACTGAAGAGAAAATATTTTACACCGAGGATGATTACCGTGAATTTCTGGCACGCCGGGCTTGGACATGTCTACGAGATCTTGACGGTTATAGAAATATTGACAATATGGATGATCTTCGACCTGGTGCCATATACCGAGGTGTAAGTTGA 1173 0.4348 MYLSSEKPRPIDFYKEEARDMMMEVVTNADLPPPPPPQHQQQQLQPPPPPPQMILAAESSGEDPEMEIKAPKKRAETWVQDETRSLIGFRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHEDRGGSGSGKMSCYKEIDEILRERSKCAQYKTLTPSSKVESSYMHFADKGIDDANISFGPVEASGRPTLNLERSLDHDGHPLAIAAAEVAASGVPPWNWRETPGNGGETQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPIGNYTLHLDEGMAIKVCLYDESDRIPVHTEEKIFYTEDDYREFLARRAWTCLRDLDGYRNIDNMDDLRPGAIYRGVS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03206 390 FunFam trihelix transcription factor GT-1 78 140 - -
Trre6g03206 390 CDD GT1 76 141 - -
Trre6g03206 390 ProSiteProfiles Myb-like domain profile. 70 134 IPR001005 -
Trre6g03206 390 MobiDBLite consensus disorder prediction 29 54 - -
Trre6g03206 390 PANTHER FI21293P1 40 388 - -
Trre6g03206 390 SMART sant 74 136 IPR001005 -
Trre6g03206 390 MobiDBLite consensus disorder prediction 25 65 - -
Trre6g03206 390 SUPERFAMILY Formin homology 2 domain (FH2 domain) 32 37 - -
Trre6g03206 390 Pfam Myb/SANT-like DNA-binding domain 77 163 IPR044822 -
Trre6g03206 390 Gene3D - 78 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03206 Trre-Chr6 29882474 29888537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03206 21 389 Trihelix Transcription Factor Family AT3G25990 66.845 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre6g03206 Myb_DNA-bind_4 9.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03206 - - tpra:123907830 743.036