Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03181 ATGACGACAGGTAGACATGGGGATTATCGTGATGAGGAGTTCAGGGATAGTGACTCTGATTTTGGTATTTCAAGGCGTGGATTTAGTAGTAGTTTTAAGGAAGAGTATGATAGGATTAGAAACGGTAAGGTTCGGAGTAGGGATGCTAGAGAGGGGATAATTATTCAGAGACAGAGAGATATTAGGGAGAGACAAGTTTTGAATGGCAGTTACCGGTCATCTTCGAGTAGGAGTGACTCTGGCAGCAGTGGTGGCCGTGGTGATAGGCTTGGTTCTAGAAAACGTGAGTTTTCTGTCAAGACTATGGATATGGAGCCAGGTGAGCTTTCTAGTGAGAGTGAGTCTGATGATGGTGTTGAATCAGAGTCACCGGTAAAATGCCATAAGGAGGTTGTGACGGGAAAAGAGTTTGGTTATGGTGTTGAATCAGAATCAGTGTTGAAACGCCATGAGGTTGCAACTGGCAAAGAAAATGGGACTCAGTCTTTATTTGAGAGGAAAAGAAAATTTTCCCCGATTGTATGGGATCAAGATGACAACAAAGTAAATAATTTATCCAAACTTAAGGTAGTCACAATATCGACTACTCTTCCTCCACCACCTCTATTTCCAAGATCATTTCGTAAGTCGTCTAATGTTCCCTACAATGGAGTTGAAGTTCATCTTCCTGAGAATCCTGAGTTGCCTACTGCCATGGATCCTTTTATGGCGTCTGAGTCAGTTCAAGATGCTGAATCTGAGTCTCCTATAGGTTTGGATTCAATGCTGTCAGAGCAGAGGTTGGTTAATGGGTGGGTAGCTGAGCAACCTGAAGTTGAAGATTATGTTCCAACTCGTAATATATCGTCTTCAAGATGGGCATCTGGAGACAAATCTTCGGACGATGAAGGTTTTGATAGGGCTAGAACCAAGTCATCTGAATCGGAAGAAAGAGGTAGCACTGGGAGATACTCCGGTGAAGATGATCATCCTGGTATTGAGGCAGAGAAGGATAGCTACATGGAGATTGATGGTGGAGTTTGCAAAAGTGACACAAGTGGTAGTCACACAAATACTGATTCTGAACGTGAAGATGATGGCAGAGAAAGTATGGAATCTCCGGCTCCACCACACAGAGTTGTCAACATGCTTCAGGGCTGTAGAAGTGTTGATGAGTTTGAGCGATTGAACAAGATTGATGAAGGAACATATGGTGTTGTATTTAGGGCCAAAGACAAGAAGACCGGTGAAATAGTGGCATTGAAAAAGGTAAAGATGGAGAAAGAAAAAGAAGGCTTTCCACTGACTTCTCTGAGGGAAATAAACATACTTCTTTCCTTTCATCATCCATTCGTAGTTGACGTTAAGGAAGTAGTGGTAGGGAGTAGCCTTGATAGTATTTTTATGGTTATGGAATACATGGAACATGATCTTAAAGGACTAATGGAGGCAATGAGACAACCATTTAGCCAGAGTGAAGTAAAATGCTTAATGCTCCAGCTGTTAGAAGGTGTGAAGTATCTTCACGACAACTGGGTGCTTCACAGGGATTTGAAGACTTCAAACCTGCTTCTGAATAATAAGGGTGAGTTAAAAATTTGCGATTTCGGATTAGCTCGTCAGTATGGAAGTCCATTGAAACCATATACATCATTGGTGGTTACACTTTGGTACAGGGCTCCTGAACTTCTTTTGGGGACAAAGCAGTATTCAACAGCCATTGACATGTGGTCCCTGGGTTGTATAATGGCTGAGCTACTGGCCAAGGAACCGTTATTTAATGGGAGGAATGAATTTGATCAACTTAACAAGATCTTCAGAATTCTCGGCACCCCAAATGAAACAATTTGGCCTGGGTTCTCAAAATTACCTCAAGTCAAGGCCAATTATGTTAAGCATCAGTATAATCTACTGCGCAAAAAATTTCCTGCAACATCATTCACTGGATCCCCAGTTCTTTCTGATTCTGGATTGGATCTGTTGAACAAGCTTCTCACTTATGACCCTGAAAAGAGGATCAATGCTGAAGATGCTCTCAACCATGAGTGGTTTCGTGAAGTTCCCCTTCCCAAATCTAAAGAATTCATGCCTACGTTTCCTGCTCAACATGATAAAGACAGGAGAATGCGAAAAATAATGAAGAGTCTACATCTTATTTTTGGTTAA 2145 0.4182 MTTGRHGDYRDEEFRDSDSDFGISRRGFSSSFKEEYDRIRNGKVRSRDAREGIIIQRQRDIRERQVLNGSYRSSSSRSDSGSSGGRGDRLGSRKREFSVKTMDMEPGELSSESESDDGVESESPVKCHKEVVTGKEFGYGVESESVLKRHEVATGKENGTQSLFERKRKFSPIVWDQDDNKVNNLSKLKVVTISTTLPPPPLFPRSFRKSSNVPYNGVEVHLPENPELPTAMDPFMASESVQDAESESPIGLDSMLSEQRLVNGWVAEQPEVEDYVPTRNISSSRWASGDKSSDDEGFDRARTKSSESEERGSTGRYSGEDDHPGIEAEKDSYMEIDGGVCKSDTSGSHTNTDSEREDDGRESMESPAPPHRVVNMLQGCRSVDEFERLNKIDEGTYGVVFRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPFVVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMRQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNKGELKICDFGLARQYGSPLKPYTSLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLAKEPLFNGRNEFDQLNKIFRILGTPNETIWPGFSKLPQVKANYVKHQYNLLRKKFPATSFTGSPVLSDSGLDLLNKLLTYDPEKRINAEDALNHEWFREVPLPKSKEFMPTFPAQHDKDRRMRKIMKSLHLIFG 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03181 714 CDD STKc_CDC2L1 380 677 IPR045267 GO:0004674|GO:0005524|GO:0006468
Trre6g03181 714 MobiDBLite consensus disorder prediction 67 85 - -
Trre6g03181 714 MobiDBLite consensus disorder prediction 88 102 - -
Trre6g03181 714 Gene3D Transferase(Phosphotransferase) domain 1 469 709 - -
Trre6g03181 714 SUPERFAMILY Protein kinase-like (PK-like) 378 683 IPR011009 -
Trre6g03181 714 Gene3D Phosphorylase Kinase; domain 1 371 468 - -
Trre6g03181 714 Pfam Protein kinase domain 386 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03181 714 PANTHER CELL DIVISION PROTEIN KINASE 384 683 - -
Trre6g03181 714 MobiDBLite consensus disorder prediction 276 372 - -
Trre6g03181 714 MobiDBLite consensus disorder prediction 289 337 - -
Trre6g03181 714 ProSiteProfiles Protein kinase domain profile. 386 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03181 714 MobiDBLite consensus disorder prediction 1 127 - -
Trre6g03181 714 MobiDBLite consensus disorder prediction 1 22 - -
Trre6g03181 714 MobiDBLite consensus disorder prediction 349 366 - -
Trre6g03181 714 FunFam Cyclin-dependent kinase G-2 469 708 - -
Trre6g03181 714 FunFam cyclin-dependent kinase G-2 isoform X1 371 468 - -
Trre6g03181 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Trre6g03181 714 MobiDBLite consensus disorder prediction 30 66 - -
Trre6g03181 714 SMART serkin_6 386 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03181 Trre-Chr6 29484969 29488485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03181 360 697 Core Cell Cycle Gene Families AT5G10270 46.742 4.95e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Trre6g03181 Pkinase 2.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03181 K08818 - gmx:100793729 904.434