Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03175 ATGATGGTGTTGGTGAATTCTAGTAATAATACAGGTTTAAGAAAACAAGTATTTCCAATTGATTACGAAACAGAAATGTCACAGCGTCTCGTAGATGCTGTTCATCACGGTGAAACTGATATTGCCATTCAATATCTATCCAATACTTCGGTTGATGTTAACTTCATTGGAACAGTTTTGTTGAAATCCAAAACCACTGAGATTGTTCTTCAAGATGAGTTACCTCACCGAGTTCACTCGGTTTATCAAGAGTTTAAAACTGAGGTTACTGCTCTTTTTTTGGCTGCACATTCTGGAAATTTCATACTCCTTCGTAAACTACTGAATGTGGGAGCTAATGTAAATGTGAGATTGTTCCGAGGCTATGCTACAACAGCAGCAGTGAGGGAAGGACATTTGAAAATATTGGAGGTTCTTATCAACGGTGGAGCGTCACAACTTGCATGTGAAGAAGCTTTACTTGAAGCATGCTACGTAGGACGGGCCACATTTGCTGAACTGTTGATGCAGTCCAACATGGTCCGTCCTCATGTTGCAATTCATGCCCTTGTTTCTGCTTGTTGCAGAGGCTTCATTGAGGTTGTCGATGTACTCATCAAGCATGGAGTGGATGTGAATGCAATGGATAGGACTCTACTTCAATCTTCAAAGCCATTTCTTCACGCTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATTAATGTTGTTAGACTATTGTTGCAGGTTGGTGTAAGACTTGATATCAAGGTGAAATTGGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAATTTCGAGTCGGTGTTGGACTAGCCGAGCCTTATCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACCGGAACTATACTCCATATGCTTCTCCAACACCTCTCACCTAATAGTTTCCACATCGGAAGAACTCTCTTGCACCACACCGTTGTTTGTAACAACGAAAGAGCATTGAATATACTTCTCAATAATGGTGTGGATACAGAATTAGTACTTCAAACTACTGAAGAAACAAATGTACACCCTATTCACATGGCTGCGCGACTTGGATCATGCAGCATTCTTCAGTCTTTGATTGATGGTAAGTGTAACTTGGACTCACAAACAAAATTTGGTGACACAGCATTGATGATTTGTACAAGGTATAAAAATGAGAAGTGTCTTAGAGTTTTAGTATCTTCGGGAGCCGATTTGGGGATTGTAAATTCGTCCGGTCATTGTGCAACTTCATTAGCAAATTTTGTTCAGTGGAGTAAAGAATATCAGAAAGCAATTTTGGATATCATTAGAGGCGGAAAAGTTCTTAAATCAAGCAATGCGTGTGGATTTTCAACTTTGTTATTCGTCACTGGCGCGAATGACATAGAGGCTTTGAAAAAACTCATCGAAAATAAAAACATAAATCTAGATGAACAAAATGGGAATGGATTTTCAGCTGCAATGATAGCTTGTGCAGGGGGTAATGTGGAAGTTTTCAAGTTGCTTCTTTATGCTGGAGCTGATGTAATTAATCTGAAAAACAAATATGGTTTAACAGCTCTTAATCTAATAGACTTAAACCAAAAAGGTGAAAATGGCGAAAAATTCCATAAGGTGATGTTTGACTATGCACTTCAAAAAGGATGCAATGTTGTTACTTTAGCCGTGGCGAATCCTCTTCACCGTGCAGCTTGTTATGGAGACATAAACATTGTTGAAAAATTATTAAAACAAGGGTATTATGATGTGAATGGTTTTGATGGAAATGGATATACACCATTGATGTTAGCAGCAAGAGAAAATAAAGGTGAAATGTGTGAGATTTTGATATCTTACGGAGCGAAATTCGATATTGAGAATGAAAAACAAGAAACAGCACTTTTACTTGCAAGAAAAAATGGGAAAGGAAATGATGCAGAGAGTGTGATAATAGATGAGTTAGCTAGAAGAGTAGTGTTGTGTGGTGCACGTGTGAAGAAACATACAAAATGTGGTAAAGGATTACCACATAGGAAACAATTGGTAATGGTTGGTGCTGCTGGAATCTTACGTTGGGGGAAATCAAATAAGAGAAATGTTGTTTGTAAAGTGGCTGAGGTTGGACCAAGTGAAAGATTTCGATGGAACCGAAGGAAGAAGTTTGATGTTGATGAACAAGGAATGTTTTATGTTGTTACTGCTAAAAATAAAGAGGTGCATTTTGTTTGTGAAGGTGGGGTTGAAATGGCTGAGTTATGGGTTAGGGGGATTAGATTAGTAACAAGAGAAGCTATTTTTGGTTCTAGAGCTAATACTGATTAA 2310 0.3848 MMVLVNSSNNTGLRKQVFPIDYETEMSQRLVDAVHHGETDIAIQYLSNTSVDVNFIGTVLLKSKTTEIVLQDELPHRVHSVYQEFKTEVTALFLAAHSGNFILLRKLLNVGANVNVRLFRGYATTAAVREGHLKILEVLINGGASQLACEEALLEACYVGRATFAELLMQSNMVRPHVAIHALVSACCRGFIEVVDVLIKHGVDVNAMDRTLLQSSKPFLHANVDCNALFAAVVSRQINVVRLLLQVGVRLDIKVKLGAWSWETDTGEEFRVGVGLAEPYPITWCAVEYFESTGTILHMLLQHLSPNSFHIGRTLLHHTVVCNNERALNILLNNGVDTELVLQTTEETNVHPIHMAARLGSCSILQSLIDGKCNLDSQTKFGDTALMICTRYKNEKCLRVLVSSGADLGIVNSSGHCATSLANFVQWSKEYQKAILDIIRGGKVLKSSNACGFSTLLFVTGANDIEALKKLIENKNINLDEQNGNGFSAAMIACAGGNVEVFKLLLYAGADVINLKNKYGLTALNLIDLNQKGENGEKFHKVMFDYALQKGCNVVTLAVANPLHRAACYGDINIVEKLLKQGYYDVNGFDGNGYTPLMLAARENKGEMCEILISYGAKFDIENEKQETALLLARKNGKGNDAESVIIDELARRVVLCGARVKKHTKCGKGLPHRKQLVMVGAAGILRWGKSNKRNVVCKVAEVGPSERFRWNRRKKFDVDEQGMFYVVTAKNKEVHFVCEGGVEMAELWVRGIRLVTREAIFGSRANTD 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03175 769 PANTHER ANKYRIN REPEAT-CONTAINING 18 750 - -
Trre6g03175 769 ProSiteProfiles Ankyrin repeat profile. 87 119 IPR002110 GO:0005515
Trre6g03175 769 ProSiteProfiles Ankyrin repeat region circular profile. 87 117 - -
Trre6g03175 769 Gene3D - 532 668 IPR036770 -
Trre6g03175 769 ProSiteProfiles Ankyrin repeat region circular profile. 592 624 - -
Trre6g03175 769 Gene3D - 19 150 IPR036770 -
Trre6g03175 769 ProSiteProfiles Ankyrin repeat profile. 381 413 IPR002110 GO:0005515
Trre6g03175 769 Pfam Ankyrin repeats (3 copies) 320 410 IPR002110 GO:0005515
Trre6g03175 769 Pfam Ankyrin repeats (3 copies) 545 622 IPR002110 GO:0005515
Trre6g03175 769 Coils Coil 462 485 - -
Trre6g03175 769 Pfam Ankyrin repeats (many copies) 462 506 IPR002110 GO:0005515
Trre6g03175 769 ProSiteProfiles Ankyrin repeat profile. 182 210 IPR002110 GO:0005515
Trre6g03175 769 SUPERFAMILY Ankyrin repeat 311 634 IPR036770 -
Trre6g03175 769 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Trre6g03175 769 ProSiteProfiles Ankyrin repeat region circular profile. 485 512 - -
Trre6g03175 769 SMART ANK_2a 178 207 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 311 340 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 224 253 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 381 410 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 119 148 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 348 377 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 485 515 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 558 588 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 451 479 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 87 116 IPR002110 GO:0005515
Trre6g03175 769 SMART ANK_2a 592 621 IPR002110 GO:0005515
Trre6g03175 769 Gene3D - 280 426 IPR036770 -
Trre6g03175 769 Gene3D - 151 263 IPR036770 -
Trre6g03175 769 ProSiteProfiles Ankyrin repeat profile. 485 517 IPR002110 GO:0005515
Trre6g03175 769 SUPERFAMILY PH domain-like 653 756 - -
Trre6g03175 769 Gene3D - 427 531 IPR036770 -
Trre6g03175 769 SUPERFAMILY Ankyrin repeat 30 256 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03175 Trre-Chr6 29456832 29461408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03175 337 528 Ion Channels AT4G32500 29.016 1.47e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03175 - - mtr:11444172 1319.68