Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03173 ATGGATGTTTCCGAGGTCGAGGAAAGTTTCTTTGCAGCAAGTGATGCCAAGTTACATGCAGAAATGTGCAGAAGTCTTTCTGCAATATATTGTAAAATATTGTCAATATTTCCTTCTTTTGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCACTGCATGTAGCCTTAGAGAAGGCGAAGAACGTACTTCAGCACTGCACAGAGTCTAGTAAACTTTACTTGGCTATAACTGGAGATTCCGTTCTTCTAAAATTTGAGAAGGCCAAGTGTGCTATTGTAGATAGTCTTAAGCTGGTAGAAGATATTGTTTCCCAATCAATTGCATGTCAGATTGATGAAATTGTGAATGAAATTTCTGGTATGGTGTTTGCGCTTGATCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGATAGAAAGTTTAACAACTCTAATGACAGTAGTGAACTTGAGTGTTTTCATATGGCTGCTACTAGACTTGGAATCACGTCTTCCAGAGCAGCTCTCACCGAAAGAAGAGCTCTTAAAAAACTCATTGAAAGGGCTCGGGCCGAGGAAGACAAGAGGAAGGAATCAATTATTGCATATCTATTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAAGGTTCTCAACCTTGTTCTCCCACCGTTCAGAGACCCCTCGAGGATGGTGTTCCTGCTGGTCATTGTCAAGCCTTTGATAGACAGATATCAAAACTTAGTTCTTTTAATTTTAAGCCGAACAATAAGAAATCGGGACAAATGCCCCTTCCACCAGAAGAATTAAGGTGTCCGATCTCTCTGCAACTTATGAGCGATCCTGTTATAATTGCTTCTGGACAGACATATGAAAGAGCTTGTATAGAAAAATGGTTCAATGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTCGCACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCTGAAGGTCCTCCCGAATCTCTTGATTTTAATTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAAATGAAGGGTGTCAAAGTTGTTCCACTTGAAGAGAATGTTATCTTAGAGAAAACTGAGGGAAATGTAACCGAAACTTTGTCTACACAAGAAGAGGAAGACAGTGAGCAGTATCTTAGTTTTCTGAAAGTATTGACTGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTGGTAGAGAGGTTGAGGTTTTTGCTGCGGGACGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTTCAGTTCCTGCAAACAGCTGTGCGTGAAGGGAATGTGAAGGCTCGGGAAAATGGAGCTATGGCTCTGTTCAACCTTGCTGTGAATAACAACAGAAATAAGGAACTTATGATATCAGCAGGAATCTTATCGTTGTTGGAGGAAATGATAATGATTTCAAGCACCAGTTCATACAGTTGTGCAACCGCCCTGTATCTGAATCTTTCTTGCCTCGAAGAAGCCAAGCAAGTGATTGGTGCGAGTCAGGCTGTGCAGTTCCTAATCCAGATGCTTCAACCTAAGACAGAAGTCCAGTGCAAGATGGATGCCCTTCACGCACTCTATAATATTTCTACCGTGTCCTCGAATATTTCAAACCTTATTTCTTCTGGCATCATCAATGGCCTACAATCCCTTCTTGTAGGCCAAACTGAATGCATGTGGTCAGAAAAATGCATAGCTGTTTTGGTTAATTTGGCGGTTTCTCAGGTAGGAAGAGAGGAAATGATCTTGAATCCTGAACTGATAACGACATTGGCTTCAATACTCGATACCGGTGAATCCATAGAGCAGGAACAAGCTGTGTCTTGTCTCCTAATATTATGTAACAGGAGTGAGAAATGTTGTGAGATGGTCTTGCAAGAAGGGGCTATACCTGCATTGGTGTCGATATCGGTAAATGGAACCTCAAGAGGAAGAGAGAAAGCTCAAAAGCTGTTGATGCTCTTTCGAGAGCAGCGACAGCGAGACCATTCACCTGCTAAGACTCAATACTGCTCACCTGAAGCTGGTGATTTGTCCATGCCTTCTCAAGAAGCGAAACCGCTAAGTAAATCAATATCTAGAAGAAGAGTGGGGAAAGCTTTAAGTTTTCTATGGAAAAGCAAGAGCTATTCTGTTTACCAGTGCTAG 2304 0.4141 MDVSEVEESFFAASDAKLHAEMCRSLSAIYCKILSIFPSFEAARPRSKSGIQALCSLHVALEKAKNVLQHCTESSKLYLAITGDSVLLKFEKAKCAIVDSLKLVEDIVSQSIACQIDEIVNEISGMVFALDPSEKQVGDDLIALLQQDRKFNNSNDSSELECFHMAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRPLEDGVPAGHCQAFDRQISKLSSFNFKPNNKKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFNDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESTNSRSVNSVNSCKMKGVKVVPLEENVILEKTEGNVTETLSTQEEEDSEQYLSFLKVLTEGNNWKRKCKVVERLRFLLRDDEEARIFMGANGFVEALFQFLQTAVREGNVKARENGAMALFNLAVNNNRNKELMISAGILSLLEEMIMISSTSSYSCATALYLNLSCLEEAKQVIGASQAVQFLIQMLQPKTEVQCKMDALHALYNISTVSSNISNLISSGIINGLQSLLVGQTECMWSEKCIAVLVNLAVSQVGREEMILNPELITTLASILDTGESIEQEQAVSCLLILCNRSEKCCEMVLQEGAIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPAKTQYCSPEAGDLSMPSQEAKPLSKSISRRRVGKALSFLWKSKSYSVYQC 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03173 767 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Trre6g03173 767 MobiDBLite consensus disorder prediction 711 741 - -
Trre6g03173 767 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Trre6g03173 767 Gene3D - 402 720 IPR011989 -
Trre6g03173 767 CDD RING-Ubox_PUB 280 332 IPR045210 -
Trre6g03173 767 SUPERFAMILY ARM repeat 418 709 IPR016024 -
Trre6g03173 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Trre6g03173 767 MobiDBLite consensus disorder prediction 222 246 - -
Trre6g03173 767 Coils Coil 175 195 - -
Trre6g03173 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Trre6g03173 767 PANTHER U BOX DOMAIN-CONTAINING 21 711 - -
Trre6g03173 767 SUPERFAMILY RING/U-box 276 354 - -
Trre6g03173 767 MobiDBLite consensus disorder prediction 224 238 - -
Trre6g03173 767 SMART arm_5 501 541 IPR000225 GO:0005515
Trre6g03173 767 SMART arm_5 542 583 IPR000225 GO:0005515
Trre6g03173 767 SMART arm_5 455 499 IPR000225 GO:0005515
Trre6g03173 767 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Trre6g03173 767 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03173 Trre-Chr6 29444456 29448114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03173 1 766 U-box Gene Family AT1G24330 65.345 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03173 - - gmx:100804344 1248.8