Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03172 ATGATGGATGTTTCCGAGGTCGAGGAAAGTTTCTTTGCAGCAAGTGATGCCAAGTTACATGCAGAAATGTGCAGAAGTCTTTCTGCAATATATTGTAAAATATTGTCAATATTTCCTTCTTTTGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCACTGCATGTAGCCTTAGAGAAGGCGAAGAACGTACTTCAGCACTGCACAGAGTCTAGTAAACTTTACTTGGCTATAACTGGAGATTCCGTTCTTCTAAAATTTGAGAAGGCCAAGTGTGCTATTGTAGATAGTCTTAAGCTGGTAGAAGATATTGTTTCCCAATCAATTGCATGTCAGATTGATGAAATTGTGAATGAAATTTCTGGTATGGTGTTTGCGCTTGATCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGATAGAAAGTTTAACAACTCTAATGACAGTAGTGAACTTGAGTGTTTTCATATGGCTGCTACTAGACTTGGAATCACGTCTTCCAGAGCAGCTCTCACCGAAAGAAGAGCTCTTAAAAAACTCATTGAAAGGGCTCGGGCCGAGGAAGACAAGAGGAAGGAATCAATTATTGCATATCTATTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAAGGTTCTCAACCTTGTTCTCCCACCGTTCAGAGACCCCTCGAGGATGGTGTTCCTGCTGGTCATTGTCAAGCCTTTGATAGACAGATATCAAAACTTAGTTCTTTTAATTTTAAGCCGAACAATAAGAAATCGGGACAAATGCCCCTTCCACCAGAAGAATTAAGGTGTCCGATCTCTCTGCAACTTATGAGCGATCCTGTTATAATTGCTTCTGGACAGACATATGAAAGAGCTTGTATAGAAAAATGGTTCAATGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTCGCACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCTGAAGGTCCTCCCGAATCTCTTGATTTTAATTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAAATGAAGGGTGTCAAAGTTGTTCCACTTGAAGAGAATGTTATCTTAGAGAAAACTGAGGGAAATGTAACCGAAACTTTGTCTACACAAGAAGAGGAAGACAGTGAGCAGTATCTTAGTTTTCTGAAAGTATTGACTGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTGGTAGAGAGGTTGAGGTTTTTGCTGCGGGACGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTTCAGTTCCTGCAAACAGCTGTGCGTGAAGGGAATGTGAAGGCTCGGGAAAATGGAGCTATGGCTCTGTTCAACCTTGCTGTGAATAACAACAGAAATAAGGAACTTATGATATCAGCAGGAATCTTATCGTTGTTGGAGGAAATGATAATGATTTCAAGCACCAGTTCATACAGTTGTGCAACCGCCCTGTATCTGAATCTTTCTTGCCTCGAAGAAGCCAAGCAAGTGATTGGTGCGAGTCAGGCTGTGCAGTTCCTAATCCAGATGCTTCAACCTAAGACAGAAGTCCAGTGCAAGATGGATGCCCTTCACGCACTCTATAATATTTCTACCGTGTCCTCGAATATTTCAAACCTTATTTCTTCTGGCATCATCAATGGCCTACAATCCCTTCTTGTAGGCCAAACTGAATGCATGTGGTCAGAAAAATGCATAGCTGTTTTGGTTAATTTGGCGGTTTCTCAGGTAGGAAGAGAGGAAATGATCTTGAATCCTGAACTGATAACGACATTGGCTTCAATACTCGATACCGGTGAATCCATAGAGCAGGAACAAGCTGTGTCTTGTCTCCTAATATTATGTAACAGGAGTGAGAAATGTTGTGAGATGGTCTTGCAAGAAGGGGCTATACCTGCATTGGTGTCGATATCGGTAAATGGAACCTCAAGAGGAAGAGAGAAAGCTCAAAAGCTGTTGATGCTCTTTCGAGAGCAGCGACAGCGAGACCATTCACCTGCTAAGACTCAATACTGCTCACCTGAAGCTGGTGATTTGTCCATGCCTTCTCAAGAAGCGAAACCGCTAAGTAAATCAATATCTAGAAGAAGAGTGGGGAAAGCTTTAAGTTTTCTATGGAAAAGCAAGAGCTATTCTGTTTACCAGTGCTAG 2307 0.414 MMDVSEVEESFFAASDAKLHAEMCRSLSAIYCKILSIFPSFEAARPRSKSGIQALCSLHVALEKAKNVLQHCTESSKLYLAITGDSVLLKFEKAKCAIVDSLKLVEDIVSQSIACQIDEIVNEISGMVFALDPSEKQVGDDLIALLQQDRKFNNSNDSSELECFHMAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRPLEDGVPAGHCQAFDRQISKLSSFNFKPNNKKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFNDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESTNSRSVNSVNSCKMKGVKVVPLEENVILEKTEGNVTETLSTQEEEDSEQYLSFLKVLTEGNNWKRKCKVVERLRFLLRDDEEARIFMGANGFVEALFQFLQTAVREGNVKARENGAMALFNLAVNNNRNKELMISAGILSLLEEMIMISSTSSYSCATALYLNLSCLEEAKQVIGASQAVQFLIQMLQPKTEVQCKMDALHALYNISTVSSNISNLISSGIINGLQSLLVGQTECMWSEKCIAVLVNLAVSQVGREEMILNPELITTLASILDTGESIEQEQAVSCLLILCNRSEKCCEMVLQEGAIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPAKTQYCSPEAGDLSMPSQEAKPLSKSISRRRVGKALSFLWKSKSYSVYQC 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03172 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Trre6g03172 768 SMART arm_5 502 542 IPR000225 GO:0005515
Trre6g03172 768 SMART arm_5 456 500 IPR000225 GO:0005515
Trre6g03172 768 SMART arm_5 543 584 IPR000225 GO:0005515
Trre6g03172 768 MobiDBLite consensus disorder prediction 223 247 - -
Trre6g03172 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Trre6g03172 768 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Trre6g03172 768 Gene3D - 403 721 IPR011989 -
Trre6g03172 768 MobiDBLite consensus disorder prediction 712 742 - -
Trre6g03172 768 MobiDBLite consensus disorder prediction 225 239 - -
Trre6g03172 768 SUPERFAMILY RING/U-box 277 355 - -
Trre6g03172 768 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Trre6g03172 768 Coils Coil 176 196 - -
Trre6g03172 768 SUPERFAMILY ARM repeat 419 710 IPR016024 -
Trre6g03172 768 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Trre6g03172 768 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Trre6g03172 768 CDD RING-Ubox_PUB 281 333 IPR045210 -
Trre6g03172 768 PANTHER U BOX DOMAIN-CONTAINING 22 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03172 Trre-Chr6 29444453 29448114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03172 2 767 U-box Gene Family AT1G24330 65.345 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03172 - - gmx:100804344 1248.8