Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03161 ATGACTACTACTACTTCCACTTTACAAAGTAGAGAAGAAGCAAGTGCTTTGTTGAAGTGGAAATCAAGTCTTGACAACCAAAGCCAAACCATACTATGTTCATGGAATGGCAATAATTCATGCAACAACTGGCTTGGAATTGCATGTGATGAAGATTTCATATATGTTACTAATGTAAATCTCATAAACATGGGATTGAAAGGTACACTCAAAAGTCTTAACTTCACATCACTTCCAAATATTCTTACTCTTAATCTTAGTTCCAATTTCTTGAATGGAAATATTCCTAACCATATTGGAATGTTGTCCAAACTTTGTCATCTTGATCTTAGTCGCAATCTTTTCTTAGGAGCAATTCCATATGAAATAACACATTATTTGACCAGTCTTCAAATTTTAGATTTGTCTTTTAATTTTCTTAATGGTATCATTCCTAAAGAAATAGGTTCATTAAGGAATCTAAGAAATTTATATCTTAATGCAAATAACCTTTGTGGAAGTATTCCTAAAGAAATTGGAAAGTTATTGAACATAGAATCTCTATTTCTTAGTAGGAATAACCTTTATGGGTCTATTCCTCAAGAAATAGGGAAATTAGTAAACTTAAAATTTCTATTTCTTCATCGCAATAAGCTTTCTGGAACTATTCCTCGAGAATTTGGCAAGTTATTGAAAATAGAGTATCTACTTCTTAAAGGTAATATTCTTTCTGGTTCCATTCCTACCGAAATCGGAATGATGAGATCTTTGACTCAAATTGATTTGTCAAATAATACTTTCTCTGGTAAAGTCCCACCTTCAATTGGAAACTTGAGCAATTTACAAATTCTTCACATTGAAGAAAACCATCTAAGTGGGACAATTCCGACAGGATTGAGTTTGCTTGCTAATATGAAAGTACTCTTTGTATATGATAACAATTTCATTGGTGAGTTGCCTCATAACATTTGCTTTAGTGGAAACTTGACATCCATTATTGCTTCAAATAACCATTTTACTGGCCAAGTTCTAAAGAGTTTGAAGAACTGTTCTAATCTTATTAGACTTAGGCTTGATCACAACCATTTTGATGGAAACATAACTGATGATTTTGGTGTATATCCAAATTTGAAGTTCATGGAATTGGATCACAATAATTTTTATGGCCACCTTCCATCCAACTGGGGAAAGTTTCATAACTTGACACAACTTCACATCTCCAAAAATAATATATCGGGTTGTATACCACCCGAACTCGGTGAAGCATCTAGCCTGTATTCAATTGACTTATCTTCAAACCATCTTACAGGAAATATTCCAAAGGAGTTAGGCAATTTGACTATGTTGGGCAAACTTTTTTTATCGAACAACCATCTTTCTGGTATTTTTCATCCACAAATATCATCGTTAAATGGACTTGAAACCTTAGATGTTGCATCAAATAATCTAAGCGGCTTCCTCCCAAAAGAACTTGCCAAATTGCCTAACTTATGGAACTTAAATTTGAGCCATAATAAATTCAAAGGAAATATACCTGTTGATTTTGGAAATTTTAAAAAACTTCTATTTCTTGATCTTAGTGGAAATTTTTTGAATGGAACCATACCACTAATGCTTGGAAAGCTTCAACTCTTAGAAACATTGAATATTTCACATAACAATCTTTCTGGATTTATCCCCTCTTCCTTGGATCAAATGATTAGTTTGTGGTTGGTTGACATATCATATAACCAGTTGATGGGTGCACTTCCAAATACGCGAGCATTCAATAACGCTACTTTTGAAGTGTTGAGAAATAATGCAGGCTTGTGCGGTAATGTTTCTGGCTTGAAGCCTTGCATAAAACCAACCAGTGGATCTCATAATAATGTGATTAAGAAAGTGATATTTTTCATAGTTTTACCTCTAGCACTAGGAACTCTAATGCTAGCGATCATTTGTTTCAAATTTTCGTATTGTTTCTGTCATTCGTCAACCACAAGAGAAAACCAGGACGGAGGAAACATCATTGCTCCTAAAAATGTATTTACAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGATTTTGATGACAAACATCTCGTCGGGGAAGGAGCGAATGGAAGTGTTTACAAAGCAGAGTTGCAGACAGGTCAGGTAGTTGCTGTTAAAAAACTCCATTTAGTAGCGGATACAGAGAACCCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTAACAGAAATTCGGCATCGCAACATTGTGAAGTTATATGGATTTTGTTCACATTCACACTTATCGTTTTTGGTTTACGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAACGATGATGATGAAGCAATTGCATTTGATTGGAATAAGAGGGCAAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCATTATGATTGCTCCCCTCCAATTGTTCATCGAGATATATCGAGCAAGAATATTCTTTTGGATTTAGAATATGTGGCTCATGTCTCCGACTTTGGAACGGCTAAGCTTCTTAATCTTAATTCATCCAATTGGACCTCTTTTGCAGGCACATTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAAAATGATGTGTATAGTTTTGGAGTATTAGCATTGGAAATACTTTTTGGAAAACACCCTGCAGATATTCTATCTAATTCTTTACAATGGATTATCATGGGATCAACACTTGATACAATGCCATTGATGAATAAGTTGGATCAACGGCTCTCTGGTCCGGCGAATCTACGACAAGCTAAGGAGTTAGTATCTATTGCAAAGACAACAATTTCTTGCTTGGCTGATAGTCCACAATCTCGCCCTACCATGTTGCAGGTTTCTAGGGAGCTTTTAAGTGTGTAG 2898 0.3492 MTTTTSTLQSREEASALLKWKSSLDNQSQTILCSWNGNNSCNNWLGIACDEDFIYVTNVNLINMGLKGTLKSLNFTSLPNILTLNLSSNFLNGNIPNHIGMLSKLCHLDLSRNLFLGAIPYEITHYLTSLQILDLSFNFLNGIIPKEIGSLRNLRNLYLNANNLCGSIPKEIGKLLNIESLFLSRNNLYGSIPQEIGKLVNLKFLFLHRNKLSGTIPREFGKLLKIEYLLLKGNILSGSIPTEIGMMRSLTQIDLSNNTFSGKVPPSIGNLSNLQILHIEENHLSGTIPTGLSLLANMKVLFVYDNNFIGELPHNICFSGNLTSIIASNNHFTGQVLKSLKNCSNLIRLRLDHNHFDGNITDDFGVYPNLKFMELDHNNFYGHLPSNWGKFHNLTQLHISKNNISGCIPPELGEASSLYSIDLSSNHLTGNIPKELGNLTMLGKLFLSNNHLSGIFHPQISSLNGLETLDVASNNLSGFLPKELAKLPNLWNLNLSHNKFKGNIPVDFGNFKKLLFLDLSGNFLNGTIPLMLGKLQLLETLNISHNNLSGFIPSSLDQMISLWLVDISYNQLMGALPNTRAFNNATFEVLRNNAGLCGNVSGLKPCIKPTSGSHNNVIKKVIFFIVLPLALGTLMLAIICFKFSYCFCHSSTTRENQDGGNIIAPKNVFTIWSFDGKMVYENIIEATEDFDDKHLVGEGANGSVYKAELQTGQVVAVKKLHLVADTENPNLKSFTNEIQALTEIRHRNIVKLYGFCSHSHLSFLVYEFMEKGSLEKILNDDDEAIAFDWNKRANAIKDVANALCYMHYDCSPPIVHRDISSKNILLDLEYVAHVSDFGTAKLLNLNSSNWTSFAGTFGYAAPELAYTMEVNEKNDVYSFGVLALEILFGKHPADILSNSLQWIIMGSTLDTMPLMNKLDQRLSGPANLRQAKELVSIAKTTISCLADSPQSRPTMLQVSRELLSV 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03161 965 Pfam Protein kinase domain 691 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03161 965 PANTHER LEUCINE RICH REPEAT KINASE 2 244 964 - -
Trre6g03161 965 FunFam Nuclear pore complex protein NUP107 10 170 - -
Trre6g03161 965 Gene3D Ribonuclease Inhibitor 10 293 IPR032675 -
Trre6g03161 965 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Trre6g03161 965 SUPERFAMILY Protein kinase-like (PK-like) 670 961 IPR011009 -
Trre6g03161 965 SUPERFAMILY RNI-like 58 381 - -
Trre6g03161 965 Pfam Leucine rich repeat N-terminal domain 12 50 IPR013210 -
Trre6g03161 965 SMART LRR_typ_2 487 510 IPR003591 -
Trre6g03161 965 SMART LRR_typ_2 199 223 IPR003591 -
Trre6g03161 965 SMART LRR_typ_2 151 175 IPR003591 -
Trre6g03161 965 SMART LRR_typ_2 391 415 IPR003591 -
Trre6g03161 965 SMART LRR_typ_2 439 458 IPR003591 -
Trre6g03161 965 SMART LRR_typ_2 271 295 IPR003591 -
Trre6g03161 965 SMART LRR_typ_2 102 126 IPR003591 -
Trre6g03161 965 SMART LRR_typ_2 535 558 IPR003591 -
Trre6g03161 965 SMART LRR_typ_2 463 486 IPR003591 -
Trre6g03161 965 SMART LRR_typ_2 127 150 IPR003591 -
Trre6g03161 965 ProSitePatterns Tyrosine protein kinases specific active-site signature. 814 826 IPR008266 GO:0004672|GO:0006468
Trre6g03161 965 FunFam Leucine-rich repeat receptor protein kinase MSP1 652 768 - -
Trre6g03161 965 ProSiteProfiles Protein kinase domain profile. 690 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03161 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 295 610 - -
Trre6g03161 965 Gene3D Ribonuclease Inhibitor 294 608 IPR032675 -
Trre6g03161 965 FunFam MDIS1-interacting receptor like kinase 2 769 965 - -
Trre6g03161 965 Gene3D Phosphorylase Kinase; domain 1 660 768 - -
Trre6g03161 965 Gene3D Transferase(Phosphotransferase) domain 1 769 965 - -
Trre6g03161 965 Pfam Leucine Rich Repeat 538 557 IPR001611 GO:0005515
Trre6g03161 965 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515
Trre6g03161 965 Pfam Leucine rich repeat 442 500 IPR001611 GO:0005515
Trre6g03161 965 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 192 290 - -
Trre6g03161 965 SUPERFAMILY L domain-like 340 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03161 Trre-Chr6 29337650 29340919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03161 12 862 Receptor kinase-like Gene Family AT4G08850 43.846 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre6g03161 Pkinase 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03161 - - tpra:123888271 1502.26