Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03160 ATGTGCTTTTGTACACTCATGACTACTACTACTTCCACTTTACAAAGTAGAGAAGAAGCAAGTGCTTTGTTGAAGTGGAAATCAAGTCTTGACAACCAAAGCCAAACCATACTATGTTCATGGAATGGCAATAATTCATGCAACAACTGGCTTGGAATTGCATGTGATGAAGATTTCATATATGTTACTAATGTAAATCTCATAAACATGGGATTGAAAGGTACACTCAAAAGTCTTAACTTCACATCACTTCCAAATATTCTTACTCTTAATCTTAGTTCCAATTTCTTGAATGGAAATATTCCTAACCATATTGGAATGTTGTCCAAACTTTGTCATCTTGATCTTAGTCGCAATCTTTTCTTAGGAGCAATTCCATATGAAATAACACATTATTTGACCAGTCTTCAAATTTTAGATTTGTCTTTTAATTTTCTTAATGGTATCATTCCTAAAGAAATAGGTTCATTAAGGAATCTAAGAAATTTATATCTTAATGCAAATAACCTTTGTGGAAGTATTCCTAAAGAAATTGGAAAGTTATTGAACATAGAATCTCTATTTCTTAGTAGGAATAACCTTTATGGGTCTATTCCTCAAGAAATAGGGAAATTAGTAAACTTAAAATTTCTATTTCTTCATCGCAATAAGCTTTCTGGAACTATTCCTCGAGAATTTGGCAAGTTATTGAAAATAGAGTATCTACTTCTTAAAGGTAATATTCTTTCTGGTTCCATTCCTACCGAAATCGGAATGATGAGATCTTTGACTCAAATTGATTTGTCAAATAATACTTTCTCTGGTAAAGTCCCACCTTCAATTGGAAACTTGAGCAATTTACAAATTCTTCACATTGAAGAAAACCATCTAAGTGGGACAATTCCGACAGGATTGAGTTTGCTTGCTAATATGAAAGTACTCTTTGTATATGATAACAATTTCATTGGTGAGTTGCCTCATAACATTTGCTTTAGTGGAAACTTGACATCCATTATTGCTTCAAATAACCATTTTACTGGCCAAGTTCTAAAGAGTTTGAAGAACTGTTCTAATCTTATTAGACTTAGGCTTGATCACAACCATTTTGATGGAAACATAACTGATGATTTTGGTGTATATCCAAATTTGAAGTTCATGGAATTGGATCACAATAATTTTTATGGCCACCTTCCATCCAACTGGGGAAAGTTTCATAACTTGACACAACTTCACATCTCCAAAAATAATATATCGGGTTGTATACCACCCGAACTCGGTGAAGCATCTAGCCTGTATTCAATTGACTTATCTTCAAACCATCTTACAGGAAATATTCCAAAGGAGTTAGGCAATTTGACTATGTTGGGCAAACTTTTTTTATCGAACAACCATCTTTCTGGTATTTTTCATCCACAAATATCATCGTTAAATGGACTTGAAACCTTAGATGTTGCATCAAATAATCTAAGCGGCTTCCTCCCAAAAGAACTTGCCAAATTGCCTAACTTATGGAACTTAAATTTGAGCCATAATAAATTCAAAGGAAATATACCTGTTGATTTTGGAAATTTTAAAAAACTTCTATTTCTTGATCTTAGTGGAAATTTTTTGAATGGAACCATACCACTAATGCTTGGAAAGCTTCAACTCTTAGAAACATTGAATATTTCACATAACAATCTTTCTGGATTTATCCCCTCTTCCTTGGATCAAATGATTAGTTTGTGGTTGGTTGACATATCATATAACCAGTTGATGGGTGCACTTCCAAATACGCGAGCATTCAATAACGCTACTTTTGAAGTGTTGAGAAATAATGCAGGCTTGTGCGGTAATGTTTCTGGCTTGAAGCCTTGCATAAAACCAACCAGTGGATCTCATAATAATGTGATTAAGAAAGTGATATTTTTCATAGTTTTACCTCTAGCACTAGGAACTCTAATGCTAGCGATCATTTGTTTCAAATTTTCGTATTGTTTCTGTCATTCGTCAACCACAAGAGAAAACCAGGACGGAGGAAACATCATTGCTCCTAAAAATGTATTTACAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGATTTTGATGACAAACATCTCGTCGGGGAAGGAGCGAATGGAAGTGTTTACAAAGCAGAGTTGCAGACAGGTCAGGTAGTTGCTGTTAAAAAACTCCATTTAGTAGCGGATACAGAGAACCCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTAACAGAAATTCGGCATCGCAACATTGTGAAGTTATATGGATTTTGTTCACATTCACACTTATCGTTTTTGGTTTACGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAACGATGATGATGAAGCAATTGCATTTGATTGGAATAAGAGGGCAAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCATTATGATTGCTCCCCTCCAATTGTTCATCGAGATATATCGAGCAAGAATATTCTTTTGGATTTAGAATATGTGGCTCATGTCTCCGACTTTGGAACGGCTAAGCTTCTTAATCTTAATTCATCCAATTGGACCTCTTTTGCAGGCACATTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAAAATGATGTGTATAGTTTTGGAGTATTAGCATTGGAAATACTTTTTGGAAAACACCCTGCAGATATTCTATCTAATTCTTTACAATGGATTATCATGGGATCAACACTTGATACAATGCCATTGATGAATAAGTTGGATCAACGGCTCTCTGGTCCGGCGAATCTACGACAAGCTAAGGAGTTAGTATCTATTGCAAAGACAACAATTTCTTGCTTGGCTGATAGTCCACAATCTCGCCCTACCATGTTGCAGGTTTCTAGGGAGCTTTTAAGTGTGTAG 2916 0.3495 MCFCTLMTTTTSTLQSREEASALLKWKSSLDNQSQTILCSWNGNNSCNNWLGIACDEDFIYVTNVNLINMGLKGTLKSLNFTSLPNILTLNLSSNFLNGNIPNHIGMLSKLCHLDLSRNLFLGAIPYEITHYLTSLQILDLSFNFLNGIIPKEIGSLRNLRNLYLNANNLCGSIPKEIGKLLNIESLFLSRNNLYGSIPQEIGKLVNLKFLFLHRNKLSGTIPREFGKLLKIEYLLLKGNILSGSIPTEIGMMRSLTQIDLSNNTFSGKVPPSIGNLSNLQILHIEENHLSGTIPTGLSLLANMKVLFVYDNNFIGELPHNICFSGNLTSIIASNNHFTGQVLKSLKNCSNLIRLRLDHNHFDGNITDDFGVYPNLKFMELDHNNFYGHLPSNWGKFHNLTQLHISKNNISGCIPPELGEASSLYSIDLSSNHLTGNIPKELGNLTMLGKLFLSNNHLSGIFHPQISSLNGLETLDVASNNLSGFLPKELAKLPNLWNLNLSHNKFKGNIPVDFGNFKKLLFLDLSGNFLNGTIPLMLGKLQLLETLNISHNNLSGFIPSSLDQMISLWLVDISYNQLMGALPNTRAFNNATFEVLRNNAGLCGNVSGLKPCIKPTSGSHNNVIKKVIFFIVLPLALGTLMLAIICFKFSYCFCHSSTTRENQDGGNIIAPKNVFTIWSFDGKMVYENIIEATEDFDDKHLVGEGANGSVYKAELQTGQVVAVKKLHLVADTENPNLKSFTNEIQALTEIRHRNIVKLYGFCSHSHLSFLVYEFMEKGSLEKILNDDDEAIAFDWNKRANAIKDVANALCYMHYDCSPPIVHRDISSKNILLDLEYVAHVSDFGTAKLLNLNSSNWTSFAGTFGYAAPELAYTMEVNEKNDVYSFGVLALEILFGKHPADILSNSLQWIIMGSTLDTMPLMNKLDQRLSGPANLRQAKELVSIAKTTISCLADSPQSRPTMLQVSRELLSV 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03160 971 Pfam Leucine Rich Repeat 544 563 IPR001611 GO:0005515
Trre6g03160 971 Pfam Leucine Rich Repeat 135 157 IPR001611 GO:0005515
Trre6g03160 971 ProSitePatterns Protein kinases ATP-binding region signature. 702 725 IPR017441 GO:0005524
Trre6g03160 971 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 301 616 - -
Trre6g03160 971 Gene3D Ribonuclease Inhibitor 16 299 IPR032675 -
Trre6g03160 971 Gene3D Ribonuclease Inhibitor 300 614 IPR032675 -
Trre6g03160 971 FunFam Nuclear pore complex protein NUP107 16 176 - -
Trre6g03160 971 FunFam MDIS1-interacting receptor like kinase 2 775 971 - -
Trre6g03160 971 SUPERFAMILY RNI-like 64 387 - -
Trre6g03160 971 SUPERFAMILY Protein kinase-like (PK-like) 676 967 IPR011009 -
Trre6g03160 971 ProSiteProfiles Protein kinase domain profile. 696 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03160 971 Pfam Protein kinase domain 697 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03160 971 Gene3D Phosphorylase Kinase; domain 1 666 774 - -
Trre6g03160 971 Pfam Leucine rich repeat 448 506 IPR001611 GO:0005515
Trre6g03160 971 PANTHER LEUCINE RICH REPEAT KINASE 2 250 970 - -
Trre6g03160 971 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 198 296 - -
Trre6g03160 971 SUPERFAMILY L domain-like 346 604 - -
Trre6g03160 971 FunFam Leucine-rich repeat receptor protein kinase MSP1 658 774 - -
Trre6g03160 971 Gene3D Transferase(Phosphotransferase) domain 1 775 971 - -
Trre6g03160 971 Pfam Leucine rich repeat N-terminal domain 18 56 IPR013210 -
Trre6g03160 971 SMART LRR_typ_2 541 564 IPR003591 -
Trre6g03160 971 SMART LRR_typ_2 469 492 IPR003591 -
Trre6g03160 971 SMART LRR_typ_2 493 516 IPR003591 -
Trre6g03160 971 SMART LRR_typ_2 133 156 IPR003591 -
Trre6g03160 971 SMART LRR_typ_2 205 229 IPR003591 -
Trre6g03160 971 SMART LRR_typ_2 157 181 IPR003591 -
Trre6g03160 971 SMART LRR_typ_2 108 132 IPR003591 -
Trre6g03160 971 SMART LRR_typ_2 277 301 IPR003591 -
Trre6g03160 971 SMART LRR_typ_2 445 464 IPR003591 -
Trre6g03160 971 SMART LRR_typ_2 397 421 IPR003591 -
Trre6g03160 971 ProSitePatterns Tyrosine protein kinases specific active-site signature. 820 832 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03160 Trre-Chr6 29337650 29340937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03160 18 868 Receptor kinase-like Gene Family AT4G08850 43.846 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre6g03160 Pkinase 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03160 - - tpra:123888271 1501.49