Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03146 ATGGTGAAGTACTCCAGAGAACCCGATAATCCCACCAAATCCACCAAAGCCAGAGGTGCTGACCTTAGGGTGCATTTCAAGAACACCAGGGAAACAGCGTTTTCCATCAGGAAGATGCCATTGATCAAAGCCAAAAGATACTTGGAAGATGTTTTGGCCCACAAACAGGCCATTCCCTTCAGACGTTTCTGTCGTGGTGTTGGCAGGACTGCACAAGCTAAGAATGCTGGACATTCCAATGGGCAAGGACGCTGGCCCGCTAAGTCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTCTATGTTTCTCATATCCAGGTGAATCAAGCTCAAAAGCAAAGACGCCGTACCTACAGGGCTCATGGAAGAATCAATCCCTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCCGAGAAGGAAGAGGCTGTCCAGAAAGAGCCTGAGACCCAGTTGGCAACAAACAAGAAGAAGTCTCAAGCTCTTCGAAGTGGCGCTTCATCCTAA 552 0.471 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNAGHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPETQLATNKKKSQALRSGASS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03146 183 Hamap 50S ribosomal protein L22 [rplV]. 2 155 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre6g03146 183 PANTHER 60S RIBOSOMAL PROTEIN L17 1 176 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre6g03146 183 CDD Ribosomal_L22 16 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trre6g03146 183 Pfam Ribosomal protein L22p/L17e 17 153 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trre6g03146 183 MobiDBLite consensus disorder prediction 159 183 - -
Trre6g03146 183 FunFam 60S ribosomal protein L17 1 176 - -
Trre6g03146 183 Gene3D Ribosomal protein L22/L17 1 182 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre6g03146 183 MobiDBLite consensus disorder prediction 169 183 - -
Trre6g03146 183 ProSitePatterns Ribosomal protein L22 signature. 128 152 IPR018260 GO:0003735|GO:0005840|GO:0006412
Trre6g03146 183 NCBIfam 50S ribosomal protein L22 4 155 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre6g03146 183 SUPERFAMILY Ribosomal protein L22 1 155 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03146 Trre-Chr6 29227447 29229218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03146 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 84.699 2.23e-112 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03146 K02880 - cave:132179320 336.265