Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03137 ATGGTTATGGCAGAGGAAGAAGAGAACGCGTTATCTATCGAACCAGAATTTCCGAAGAGTCGAGTGAAGAAGATAATGAATCTAGATGAAGACGTGAAGAGAGTGAGTTCAGAAGCGTTGTTCTTGGTGTCGAAATCTACGGAGCTTTTTTTACAGTTACTTGCTGAAAAATCTGCGGAAGTTGTAATTGAGAAGAAACGCAAGACGGTGAAGCTTGAACATATGAGAATCGCGGTGAAGAGAAACCGTCCGATAAGTGATTTTCTTCTTGATTCACTTCCGATGCCTTCTGAAACTACCAAATCTGACAAACCTGTGGTGGTTGCTGATCGGCCTAAATCTGTTCCGGTTGGTACTCGCCGGATCGATCAAATTTTCCGAAAGTCAGAAGCGCAATTAGAAGCTCAAGTTGAAGCCCAAGTTGAGGCCCAAGTAGAAGCTCAAGTTGAATCCCAAGTAGAAGTTGAAATTGAAGTTCAAGTTGAAGCTCAAGCGTCCGAATCGGTGCCGGAACCCATGGAGGAGTCATAG 531 0.4407 MVMAEEEENALSIEPEFPKSRVKKIMNLDEDVKRVSSEALFLVSKSTELFLQLLAEKSAEVVIEKKRKTVKLEHMRIAVKRNRPISDFLLDSLPMPSETTKSDKPVVVADRPKSVPVGTRRIDQIFRKSEAQLEAQVEAQVEAQVEAQVESQVEVEIEVQVEAQASESVPEPMEES 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03137 176 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 132 - -
Trre6g03137 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 16 79 IPR003958 -
Trre6g03137 176 SUPERFAMILY Histone-fold 17 92 IPR009072 GO:0046982
Trre6g03137 176 Gene3D Histone, subunit A 1 95 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03137 Trre-Chr6 29175058 29175588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03137 5 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 58.015 1.04e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre6g03137 CBFD_NFYB_HMF 2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03137 - - gmx:100790556 177.178