Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03127 ATGCTTTTCCTTGATGATAAGTGTCACAAAATTCAAGCTACTGTTCGAAAGGATCTTATTCCTAAATATATGGATCAACTTGAAGAAGGTTCTGCTTATGTTTTTGAAAACTTCATGGTTGGTAGCAAAGATGCTTTCTACAAGTCTATCGGTCATAAATACAAGCTGAATTTTATGACCTCGACTTCGGTTTTCAAAGTAACTGCTCCTGAGATACCTAGATATCATTTTGATTTTGTGCCCTTTTCCGAAATTCTCAATGCTACTGACGAGTCTAGGTTGGTTGATGTGATCGGTCATGTAGTTGAGAAAGTTACAAACTTGACATTGAAGGATTTAGAAAACAATCGATTACACTGCTCTTTGTGGAACGATTTTGCTATGCGCTTTCACCAATTTATGGATACCCATAACTCATCTGAACCTCCTGTTATGATACCGCACTTGGTCAGACTAAAGAAAAACTCCTATTTAGGATGGATGATACTGAGCGCGAGTCAACCGAAGACAAAAAGGATGACTATTGAGGATTTGATTGAGTCCTCAGAGATCATATATGATGTCTCCATTTTCTGTGATAAAAGCGGCCAGCCAAGGACCGCAGTTCCTAGATATAAGGTCCACCTACAAGAAATAGACAGCTCCGGATCAACTACTTTTACTTTGTTTGACCGTGTTGTCTCTCGAGTGTTGGGTAGAAGTGTTCAAGATCTTCTTGTAACTATGAATCAAGATTTAACCTATCCACGTGAGCTCGACACATTTGTCGATAAAAGGATGCTGTTCAAGGGAGTGGATGGTGATAATGTTGAAGCTGGATGTGTTGAGCTAGGTAGTCAAGCTGCAGATAAGAATGATGTTGTTGAGGGAGGTGATTCAACCAAAGATGACATGAATACTCTGGGTACTCCCACAAGCAAGAATTTGGGTAAAAGGTCTATTGACAATGCTGAATCAATTTCTGATAAGGATGCTGATGGCAGCGCTTGGTCTTCATCTAATAAAATTCAGAAACTTGCCCCTGTGAAAATTGAAAAAATGGATTAA 1047 0.3916 MLFLDDKCHKIQATVRKDLIPKYMDQLEEGSAYVFENFMVGSKDAFYKSIGHKYKLNFMTSTSVFKVTAPEIPRYHFDFVPFSEILNATDESRLVDVIGHVVEKVTNLTLKDLENNRLHCSLWNDFAMRFHQFMDTHNSSEPPVMIPHLVRLKKNSYLGWMILSASQPKTKRMTIEDLIESSEIIYDVSIFCDKSGQPRTAVPRYKVHLQEIDSSGSTTFTLFDRVVSRVLGRSVQDLLVTMNQDLTYPRELDTFVDKRMLFKGVDGDNVEAGCVELGSQAADKNDVVEGGDSTKDDMNTLGTPTSKNLGKRSIDNAESISDKDADGSAWSSSNKIQKLAPVKIEKMD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03127 348 Gene3D - 1 69 IPR012340 -
Trre6g03127 348 Gene3D - 71 187 IPR012340 -
Trre6g03127 348 SUPERFAMILY Nucleic acid-binding proteins 3 67 IPR012340 -
Trre6g03127 348 MobiDBLite consensus disorder prediction 296 315 - -
Trre6g03127 348 CDD RPA1_DBD_A_like 1 64 - -
Trre6g03127 348 MobiDBLite consensus disorder prediction 285 332 - -
Trre6g03127 348 SUPERFAMILY Nucleic acid-binding proteins 76 168 IPR012340 -
Trre6g03127 348 Pfam Domain of unknown function DUF223 3 89 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03127 Trre-Chr6 28839245 28841585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03127 3 149 Core DNA Replication Machinery Family AT5G08020 24.699 1.42e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03127 - - mtr:112422829 283.493