Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03117 ATGGAGTGGAACGCGAAATCTCCCGGGCAATGGGACTGGGAAAATTTATTCTTCTTGAATTCAAAGGCAACAGAAAATCACAGGTTACAGTCTACTACTGATTGGAGTGAGGAGACAGACCGAGAAATCAATGTCGGGGTGTTGTTTCCATCAGGTGGTAATGGTTATTCCATGTCAAAACTAGCACACGCTTCATCCTCGAGGAGCTCAAAATCTCCTTCCAATAACTCATCATCAAATGGAGATAGCAAGACATCTATGTTAACTCAAGAAGGTTCTCAAGGCGATTCCACCGGTAAGAAAGAATTGTCTAAAGGAGATCCAATTGAAACTTCTCCGGCAGCAGAACCATTGCTCACACTAAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTGCCCTGAAACTCATTCCAAGAAAGCCTCTTCTTCTGCGGTTCCGCTTTCGTGCAAAAAGAAAGGTAAGTCGAAAAGTCAGAACTTACTACATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCTTCTGCTAAAGATTACCATCGAAAACATCGTATTTGTGAAAGTCATGCCAAATCACCTATGGTGGTTGTAGCTGGTTTACAGCTTCGGTTTTGCCAGCAATGTAGCAGGTTCCATTCTCTGTCAGAATTTGATGATAAAAAAAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTGCAACTGAATCCATCAGCTCTGCATTCTTCACCCTATGATCGGAGGCAAATAATGGGCTCGTTCGATTTTTCAAGGAATGCTACAAATTTAGCATGGCAAGGCATACAAAGTAGCAAGCTCCCTCAAACAAAAGATTTTATGCTCAAACCTCCAAAAGCCTTCAACAAGATTGTCACTATGCTTTCTGATGATTCCAATGGCCATCTTGCATCCAAAGGCACAGGATCCAAGAGTACATTTTCAGGTATAGAAGATCAAGCTACCTTATCTGATCCAAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATACGATACCAAGTCCCTTTCCCTCGATCACTCCAACCGAACAACCGGTACCACTCAGTCTATAACAAATGCAATTGCTCAGCGCTCTCCATTTCCGTCATCCGAATACTGGCACACTGATCAGCAAAACGCCAACTCCAGTACCTGTATCTCGTTCTCAGGTTACGACAATAGCAGTCGCTTTCAAGACTTTCAGCTTTTCAGTGCACCCTTTGAGTCAAGTTTCCCTTGCAACCAGCTGGATTAA 1317 0.4404 MEWNAKSPGQWDWENLFFLNSKATENHRLQSTTDWSEETDREINVGVLFPSGGNGYSMSKLAHASSSRSSKSPSNNSSSNGDSKTSMLTQEGSQGDSTGKKELSKGDPIETSPAAEPLLTLKLGKRFYFEDVCPETHSKKASSSAVPLSCKKKGKSKSQNLLHPSCQVEGCGLDLSSAKDYHRKHRICESHAKSPMVVVAGLQLRFCQQCSRFHSLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNPSALHSSPYDRRQIMGSFDFSRNATNLAWQGIQSSKLPQTKDFMLKPPKAFNKIVTMLSDDSNGHLASKGTGSKSTFSGIEDQATLSDPNATQDVNRALSLLSTNSWGAYDTKSLSLDHSNRTTGTTQSITNAIAQRSPFPSSEYWHTDQQNANSSTCISFSGYDNSSRFQDFQLFSAPFESSFPCNQLD 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03117 438 FunFam Squamosa promoter-binding-like protein 14 157 227 - -
Trre6g03117 438 SUPERFAMILY SBT domain 164 245 IPR036893 GO:0003677|GO:0005634
Trre6g03117 438 MobiDBLite consensus disorder prediction 224 243 - -
Trre6g03117 438 Pfam SBP domain 166 239 IPR004333 GO:0003677
Trre6g03117 438 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 61 376 IPR044817 GO:0003677
Trre6g03117 438 MobiDBLite consensus disorder prediction 310 339 - -
Trre6g03117 438 MobiDBLite consensus disorder prediction 59 116 - -
Trre6g03117 438 Gene3D - 162 227 IPR036893 GO:0003677|GO:0005634
Trre6g03117 438 MobiDBLite consensus disorder prediction 59 97 - -
Trre6g03117 438 ProSiteProfiles Zinc finger SBP-type profile. 163 240 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03117 Trre-Chr6 28732773 28734571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03117 1 367 SBP-box Gene Family AT5G43270 40.617 3.03e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre6g03117 SBP 7.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03117 - - mtr:11441057 677.167