Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03112 ATGAGTTTGCTACATGTAATTGGTTTTGGTCTAAAAGTTGGGCATCTACTTTTAGTGCTATGTTGTTGGATTGTATCTCTAATTTATATCAATTGGTTTGTTAGTATGGACAGTACAAAGATGGGATTTTTAGGAGATGGTGGAAAGATGTGGCTTAAATGGTGGGAAAAGATCTTAGGAATTACTGAGAAGAGGAAAGAAACTTTAGCTAGTATGTGTGATGAAAGAGCTAGGATGTTACAAGATCAGTTTAATGTTAGTATGAATCATATTCAAGCCATGTCTATTCTCATCTCCACTTTTCATCATGCCAAAACTCCTTCTGCCATTGATCAGAAAACTTTTGCAAAGTATACAGAAAGAACTGCTTTTGAGAGGCCACTTACAAGCGGTGTTGCGTATGCTGTAAGGGTGCTTCAATCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGAGTATTAATAGGATGGATACTTTGGAACAGAATCCGGTTCACGAGGATGATTATGTAGCAGATGCATTGGAACCATCCCCTATCCATGAAGAATATGCGCCTGTTATCTTTGCGCAGGATACAATTTCACATGTCATATCTATTGACGTGCTTTCCGGAAAGGAAGACCGTGAAAATGTGTTGCGTGCAAGAGAATCGGGCAAAGGGGTTTTAACCGCTCCTTTCAGGCTGTTGAAAACAAATCGTTTAGGGGTTATCCTCACATTTGCGGTTTACAAGAGAGATCTTCCATCAAATGCTACCCCAAATGAAAGGATTCAAGCAACTGATGGGTATCTTGGTGGAGTGTTTGAAATAGAGTCATTAGTGGAGAAATTGCTTCAGCAACTTGCTAGCAAGCAAACCGTGCTCGTTAATGTGTACGATACAACAAATCGCACACATCCAATTCCCATGTATGGTTCTGATGTATCAGGTGATGAGTTTTATCATGTGAGCTTTCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCATGGCCATGGATGGCAATAGGTACATCGATCGGAATTCTTGTTATTGCACTCCTTGTTGGACATATATTTCACGCAACTGTGAATCGAATTGCTAATGTAGAGGATGATTTCCAAAAGATGATGGAACTTAAGAAACGAGCCGAGGCAGCTGATGTTGCTAAATCCCAATTTCTTGCTACTGTTTCGCACGAGATCAGAACTCCAATGAATGGTGTTTTAGGGATGATGAATATGCTAATGGACACCGATCTAGATGTAACACAACAAGAATATGTCAGAACAGCACAAGGCAGTGGAAAAGCTTTGGTGTCAATTATAAATGAAGTTTTGGACCAAGCAAAGATTGAATCTGGTAAGCTAGAGCTTGAGGCTGTGCTGTTCGATATACGAGCAATTATGGATGATGTGTTATCGCTATTTTCTGAGAAATCTCAAGGAAAAGGAGTAGAGTTAGCAGTTTACGTCTCGGATCAGGTTCCTCGACAGCTTATAGGTGATCCAGGACGGTTTCGACAAATAATTACGAATCTCATGGGTAACTCAATTAAGTTCACAGACAAAGGGCATATCTTTGTCACTATTCATCTTGTCGAGGAGGTCTTCCATTCGATAGAGGTTGAGAGAGAATCCACTTCAAAAGATACATTGAGTGGTTTCCCAATTGCTGATGGTCGCCGGAGCTGGGAAGGATTCCAAGCTTTCAGTCATGAAGGACCTCTTGGTTCTTTCTCGTCATCCTCCTCCTCCTCCTCCTCCTCCAACGATTTCATCAATTTGATTGTATCGGTTGAGGATACAGGCGACGGTATTCCTCTAGAGTCTCAGCCGAAAATATTCACTCCATTCATGCAGGTAGGTCCATCTATCTCAAGAAAACATGGGGGAACCGGTATTGGTTTAAGCATTAGCAAGTGTTTGGTTGGTCTTATGAATGGAGAAATCGGATTTGTGAGTGAACCGAAGATCGGAAGCACTTTCACATTTACAGCCGTTTTCACCAATGCATGTCCGAATTCAAACGACTTGAATAAAACTCAGCAAATCAACAACCAACCTCATTCTGCATCCTCAGAGTTTCTCGGTATGGCTGCACTTGTTATTGATCCGAGACCAGTTCGAGCTGAAGTGTCAAGATATCACATCCAAAGGCTTGGCGTTAAAGTTGAAATAGTTTCAGATTTGAAGCAAGGTTTGTCCACCGTAACCGATGGGAACGTAGCTATCAATATGGTTCTGATTGAACAAGAGGTTTGGGAAAGAGACTCAACCATGTCATCACACTTTGTGAATAACATTAGGAAAATTGCTGAAGTTGATAAAGGAATTGCTCCGAAACTATTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCTAGTTCTGCTACATCATGTGTTCATAATCCAACGGTCGTCACAAAACCTTTGAGAGCAAGTATGCTAGCTGCTTCGCTACAAAGAGCAATGGGTGTTGGGAACAAAGGAAATCCTCGAAACGGAGAACATGGTGTTTTGTCTCTCAACCATCTTCTCTCAGGGAGAAAAATTCTTATTGTAGATGATAATAGTGTGAATCGCACGGTGGCTGCTGGCGCATTGAAAAAATATGGAGCTGGTGTGGTTTGTGTAAGCAGTGGAATAGAAGCCATCACTATGCTGACGCCACCCCACGATTTTGATGCATGCTTTATGGATATTCAAATGCCTGAAATGGATGGGTTTGAAGCCACAGAACGAATTCGAGTTATTGAAGAGAGTGAAAAAAACAAAGAATTGTCTGTTCATATACCGATTTTGGCTATGACCGCAGACGTAATCCAGGCTACGCACGAGCAATGTTTAAAGCATGGAATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAACTTTATAGAGAGGTTTCAAAGTTTTTCCAATCATCTTGA 2946 0.4097 MSLLHVIGFGLKVGHLLLVLCCWIVSLIYINWFVSMDSTKMGFLGDGGKMWLKWWEKILGITEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKTPSAIDQKTFAKYTERTAFERPLTSGVAYAVRVLQSEREQFEKQQGWSINRMDTLEQNPVHEDDYVADALEPSPIHEEYAPVIFAQDTISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNRTHPIPMYGSDVSGDEFYHVSFLNFGDPFRKHEMHCRFKQKPPWPWMAIGTSIGILVIALLVGHIFHATVNRIANVEDDFQKMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKIESGKLELEAVLFDIRAIMDDVLSLFSEKSQGKGVELAVYVSDQVPRQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTSKDTLSGFPIADGRRSWEGFQAFSHEGPLGSFSSSSSSSSSSNDFINLIVSVEDTGDGIPLESQPKIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAVFTNACPNSNDLNKTQQINNQPHSASSEFLGMAALVIDPRPVRAEVSRYHIQRLGVKVEIVSDLKQGLSTVTDGNVAINMVLIEQEVWERDSTMSSHFVNNIRKIAEVDKGIAPKLFILVNSSSSFKASSATSCVHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHGVLSLNHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLTPPHDFDACFMDIQMPEMDGFEATERIRVIEESEKNKELSVHIPILAMTADVIQATHEQCLKHGMDGYVSKPFEAEQLYREVSKFFQSS 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03112 981 Gene3D - 361 456 - -
Trre6g03112 981 CDD HisKA 393 454 IPR003661 GO:0000155|GO:0007165
Trre6g03112 981 CDD PRTases_typeI 807 882 IPR000836 -
Trre6g03112 981 ProSiteProfiles Histidine kinase domain profile. 400 674 IPR005467 -
Trre6g03112 981 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 505 672 IPR003594 -
Trre6g03112 981 Gene3D - 457 675 IPR036890 -
Trre6g03112 981 Coils Coil 370 390 - -
Trre6g03112 981 Gene3D - 844 979 - -
Trre6g03112 981 FunFam Histidine kinase 4 110 339 - -
Trre6g03112 981 CDD HATPase_EvgS-ArcB-TorS-like 510 672 - -
Trre6g03112 981 Gene3D CHASE domain 110 339 IPR042240 -
Trre6g03112 981 Pfam Response regulator receiver domain 855 973 IPR001789 GO:0000160
Trre6g03112 981 ProSiteProfiles CHASE domain profile. 106 332 IPR006189 -
Trre6g03112 981 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 380 459 IPR036097 GO:0000155|GO:0007165
Trre6g03112 981 SMART HisKA_10 393 458 IPR003661 GO:0000155|GO:0007165
Trre6g03112 981 SUPERFAMILY CheY-like 850 977 IPR011006 -
Trre6g03112 981 ProSiteProfiles Response regulatory domain profile. 703 828 IPR001789 GO:0000160
Trre6g03112 981 PANTHER TWO-COMPONENT HISTIDINE KINASE 72 971 - -
Trre6g03112 981 SMART CHASE_2 106 307 IPR006189 -
Trre6g03112 981 SMART HKATPase_4 505 674 IPR003594 -
Trre6g03112 981 Pfam CHASE domain 109 305 IPR006189 -
Trre6g03112 981 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 447 669 IPR036890 -
Trre6g03112 981 Pfam His Kinase A (phospho-acceptor) domain 393 458 IPR003661 GO:0000155|GO:0007165
Trre6g03112 981 SMART REC_2 853 974 IPR001789 GO:0000160
Trre6g03112 981 Gene3D - 60 109 - -
Trre6g03112 981 CDD REC_hyHK_CKI1_RcsC-like 855 974 - -
Trre6g03112 981 PRINTS Bacterial sensor protein C-terminal signature 634 652 IPR004358 GO:0016310|GO:0016772
Trre6g03112 981 PRINTS Bacterial sensor protein C-terminal signature 599 613 IPR004358 GO:0016310|GO:0016772
Trre6g03112 981 PRINTS Bacterial sensor protein C-terminal signature 617 627 IPR004358 GO:0016310|GO:0016772
Trre6g03112 981 PRINTS Bacterial sensor protein C-terminal signature 658 671 IPR004358 GO:0016310|GO:0016772
Trre6g03112 981 FunFam Histidine kinase 4 365 456 - -
Trre6g03112 981 ProSiteProfiles Response regulatory domain profile. 854 978 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03112 Trre-Chr6 28641743 28646634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03112 1 980 Miscellaneous Gene Families AT1G27320 64.667 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre6g03112 CHASE 1e-35 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03112 K14489 - gmx:100776798 1554.65