Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03109 ATGGCAGGTTTGCATTACAATATCAGTGATCTGTTTCAAGAAGCTAAGAAAAGATGGCTCAAACCTATAGAAGTGTTTTACATTTTAAAGAATCACGACATGTGTGAGTTCACCGATATGCCCCTTAACCGGCCTCGTGGTGGAGCTGTTTATTTGTTTAATAAAAGAGTCATGCGTTTCTTTCGAAAAGATGGTCATAATTGGCGGAAGAAAAAAGATGGAAGAACTGTGGCAGAAGCACATGAACGGCTTAAGGTTGGAAATGTTGAAGCCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTAGTTTCCAGCGGCGAAGCTATTGGATGTTGAACCCGGAATATGAGCATGTTGTTCTCGTGCATTACAGAGATACAAATGAGGGGACATCCAATTCTGGACCTGCCACACAGTTGTCACCGTTTAGTCAGAGTCGCAGCTCATATACTACTCAAAACCCCGAGACAACATCCATAGTTGGTGATTCATCTGAACCTAATCAGAATTTCTCCAGTCCCGGGTCCTTAGAAGTCACCTCTGATATAGTCATCATGAATAATGGAATGGATCACTTGGAGAAAACAAATGCACAAGCTTTCCGTCAATTGGAGGAACAGTTAAGTTTGAATGACGACAGCTTCACAGAAATCTCTCCGTTTTATAGGGAACATGAAGTTCCACAGGAAATATGTGCTGCATTCTCCAGACCAGATGATCATAAACAACCATACGGTGGATATAATGGAACAAAAGATGGCAGCTGTAATCATTATCATGATTTACTTGACCATAGTTACCCTGGTGGGAATGAGAAAACATTATCTTGGACAGAAATGCTGAATTCAAGCAAGTTATCATCTGTGATCAAGTTACCAGAACAACATGCATACAAGGCATTTGAAAATGAAAAGCCGTTACCTTCTCCAGGAAGAGAAATGATTGCCAACCAGGAAAACGGTTACTGGCTACACCCCAACAATAATAATGATGAGAATTCTGTCTTTTCATTAACTCAACATATTGTTGGAGTCAACATGTCTCCATATTCTTCGGTAGAAACTCAAGGAACTAATTCTGACTACTATGAAAGATTGTTTGACCAAAGACAAATTCAAGAACCTCTGGATGCATATTCAAGGTTCACTGTTGGACAGAAATTTACAATTACGGCTATCTCCCCAGAATATTGTTATGCCACTGAGGCAACAAAGGTGATCATTATTGGATCTTTTCTTTGCCTTCCCATGGACTCTACCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAAATACTTCAGGATGGCGTAATCTGTTGTGAGGCTCCATCCCATCTTGTTGGAAAGGTTTCTCTGTGCATTACTTCAGGAAATAAGGAACCATGCAGTGAAGTCAAAGAGTTTGAATTTCGTAATATGACCAATGGTTGCACTCACTGTAATAGTTTGGAAACAGAATCTGCCAGAAGTCCAGAAGAGCTGTTATTACTTGTTCGATTTGCAGAAATGCTCCTTTCTACTTCAATTATAAAGGATGACAGCACAGAATCTGGAAGCCATCTTTCAACAGAACAGAAAGCAGATGATGATTCATGGAGCCATATTATAGACGCTCTCCTAGGTGGCAACGGAACTTCATCTGGTACTATTGATTGGATTCTTCAAGAGCTGCTGAAGGATAAGCTGCAGCATTGGCTTTCTTGCAGATCCAATGAACAAGATGAAGGGGCAGGTTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATACACATGGTTTCTGGATTGGATTTTGAGTGGGCCCTGAACCCCATTCTCAGTTGTGGCGTGAATGTTAATTTCCGTGACATCAATGGATGGACTGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCATCGCTTATTGCTGCTGGTGCATTTGCTGGAGCAGTGACAGATCCAACTTCACAAGATCCAAATGGTAAAACTGCTGCATCTATTGCGACCAGCAATGGCCACAAGGGATTGGCAGGTTATCTTGCAGAGGCAGATCTAACAAGTCATCTGTCATCCCTCACATTGGAAAAGTGTGAAGTTCCTAAAGATTCTTCTGAGCTTGAAGCCGAGTTAGCTGTCAGCAGCGTGTCTAAGAAAAATCTCGAAGCCAGTGATGATGAGGTTTCACTAAAGAATACCTTGGGTGCTGTCAGAAATGCATCTCTGGCAGCTGCACGGATACAGGCTGCTTTTCGTGCACATTCTTTCAAAAAACGGTTAGAGAGAGAAGCTTCCTCCACCACTTGTCTAAATGGATATGTCAATGGTGTAGGCAGCATTGGTGGATATGCTAGGAGCTTGCGTGATTGCAATTCAGCTGCCCTGTCAATTCAGAAGAAGTATCGGGGTTGGAAAGGTCGCAAAGAGTTCTTAGTTTTGCGCCAAAAAGTTGTAAAGATACAGGCTCATGTGAGGGGTTACCAGACTCGGAAGCAATACAAGGTGGTGATATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGGAGAAAAAGGGTTGGTTTGCGAAGCTCTCACCAAGAAAATGATTCAAAAGAAGAAAGTGACGATGAGGATTTTCTCAAGGTGTTCAGGCAAGAGAAAGTGCATGCAGCAATTGAAAAGGCTTTGGCACGGGTGCGTTCCATGGTCCGTTCTGCGCATGCTCGTCAGCAATATAATCGCCTGCTTGAGATGTATCGTCAAGCCAAGGCTGAAACACTTAAATCAACTTCTTTAGAGACAGCTTGGAATATTGAAGAAGATGAAACACTTTTATCAACTTCTTTAGAGACAGCTTGGAATATTGAAGAAGATGAAACACTTTTATCAACTTCTTTAGAGAATGCTTGGAATATTGAAGAAGATGATGATTTATATCAATTTCCATGGGAAACACTCTAG 2943 0.42 MAGLHYNISDLFQEAKKRWLKPIEVFYILKNHDMCEFTDMPLNRPRGGAVYLFNKRVMRFFRKDGHNWRKKKDGRTVAEAHERLKVGNVEALNCYYAHGEENRSFQRRSYWMLNPEYEHVVLVHYRDTNEGTSNSGPATQLSPFSQSRSSYTTQNPETTSIVGDSSEPNQNFSSPGSLEVTSDIVIMNNGMDHLEKTNAQAFRQLEEQLSLNDDSFTEISPFYREHEVPQEICAAFSRPDDHKQPYGGYNGTKDGSCNHYHDLLDHSYPGGNEKTLSWTEMLNSSKLSSVIKLPEQHAYKAFENEKPLPSPGREMIANQENGYWLHPNNNNDENSVFSLTQHIVGVNMSPYSSVETQGTNSDYYERLFDQRQIQEPLDAYSRFTVGQKFTITAISPEYCYATEATKVIIIGSFLCLPMDSTWACMFGDVEVPAEILQDGVICCEAPSHLVGKVSLCITSGNKEPCSEVKEFEFRNMTNGCTHCNSLETESARSPEELLLLVRFAEMLLSTSIIKDDSTESGSHLSTEQKADDDSWSHIIDALLGGNGTSSGTIDWILQELLKDKLQHWLSCRSNEQDEGAGCSLSKKEQGIIHMVSGLDFEWALNPILSCGVNVNFRDINGWTALHWAARFGREKMVASLIAAGAFAGAVTDPTSQDPNGKTAASIATSNGHKGLAGYLAEADLTSHLSSLTLEKCEVPKDSSELEAELAVSSVSKKNLEASDDEVSLKNTLGAVRNASLAAARIQAAFRAHSFKKRLEREASSTTCLNGYVNGVGSIGGYARSLRDCNSAALSIQKKYRGWKGRKEFLVLRQKVVKIQAHVRGYQTRKQYKVVIWAVGILDKVVLRWRRKRVGLRSSHQENDSKEESDDEDFLKVFRQEKVHAAIEKALARVRSMVRSAHARQQYNRLLEMYRQAKAETLKSTSLETAWNIEEDETLLSTSLETAWNIEEDETLLSTSLENAWNIEEDDDLYQFPWETL 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03109 980 Pfam IPT/TIG domain 390 466 IPR002909 -
Trre6g03109 980 ProSiteProfiles IQ motif profile. 886 915 IPR000048 GO:0005515
Trre6g03109 980 SUPERFAMILY E set domains 390 474 IPR014756 -
Trre6g03109 980 SUPERFAMILY Ankyrin repeat 592 682 IPR036770 -
Trre6g03109 980 Pfam Ankyrin repeats (3 copies) 606 684 IPR002110 GO:0005515
Trre6g03109 980 Coils Coil 899 919 - -
Trre6g03109 980 ProSiteProfiles Ankyrin repeat profile. 620 652 IPR002110 GO:0005515
Trre6g03109 980 SMART iq_5 737 759 IPR000048 GO:0005515
Trre6g03109 980 SMART iq_5 787 809 IPR000048 GO:0005515
Trre6g03109 980 SMART iq_5 810 832 IPR000048 GO:0005515
Trre6g03109 980 ProSiteProfiles IQ motif profile. 738 766 IPR000048 GO:0005515
Trre6g03109 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 741 838 IPR027417 -
Trre6g03109 980 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Trre6g03109 980 MobiDBLite consensus disorder prediction 128 177 - -
Trre6g03109 980 Gene3D Immunoglobulins 384 478 IPR013783 -
Trre6g03109 980 ProSiteProfiles IQ motif profile. 789 817 IPR000048 GO:0005515
Trre6g03109 980 Gene3D - 558 690 IPR036770 -
Trre6g03109 980 FunFam Calmodulin-binding transcription activator 4 isoform A 500 685 - -
Trre6g03109 980 ProSiteProfiles IQ motif profile. 811 835 IPR000048 GO:0005515
Trre6g03109 980 Gene3D - 788 834 - -
Trre6g03109 980 CDD IPT 390 474 - -
Trre6g03109 980 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Trre6g03109 980 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 925 - -
Trre6g03109 980 ProSiteProfiles Ankyrin repeat region circular profile. 620 645 - -
Trre6g03109 980 FunFam Calmodulin-binding transcription activator 2 787 835 - -
Trre6g03109 980 Pfam IQ calmodulin-binding motif 790 808 IPR000048 GO:0005515
Trre6g03109 980 Pfam IQ calmodulin-binding motif 813 832 IPR000048 GO:0005515
Trre6g03109 980 SMART CG_1_2 11 129 IPR005559 GO:0003677
Trre6g03109 980 SMART ANK_2a 659 688 IPR002110 GO:0005515
Trre6g03109 980 SMART ANK_2a 620 652 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03109 Trre-Chr6 28605211 28613731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03109 4 926 CAMTA Transcription Factor Family AT1G67310 49.487 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre6g03109 CG-1 5.1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03109 K21596 - gmx:100791430 1242.25