Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03108 ATGCTACCTGGTTTGCATTACAATATCAGTGATCTGTTTCAAGAAGCTAAGAAAAGATGGCTCAAACCTATAGAAGTGTTTTACATTTTAAAGAATCACGACATGTGTGAGTTCACCGATATGCCCCTTAACCGGCCTCGTGGTGGAGCTGTTTATTTGTTTAATAAAAGAGTCATGCGTTTCTTTCGAAAAGATGGTCATAATTGGCGGAAGAAAAAAGATGGAAGAACTGTGGCAGAAGCACATGAACGGCTTAAGGTTGGAAATGTTGAAGCCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTAGTTTCCAGCGGCGAAGCTATTGGATGTTGAACCCGGAATATGAGCATGTTGTTCTCGTGCATTACAGAGATACAAATGAGGGGACATCCAATTCTGGACCTGCCACACAGTTGTCACCGTTTAGTCAGAGTCGCAGCTCATATACTACTCAAAACCCCGAGACAACATCCATAGTTGGTGATTCATCTGAACCTAATCAGAATTTCTCCAGTCCCGGGTCCTTAGAAGTCACCTCTGATATAGTCATCATGAATAATGGAATGGATCACTTGGAGAAAACAAATGCACAAGCTTTCCGTCAATTGGAGGAACAGTTAAGTTTGAATGACGACAGCTTCACAGAAATCTCTCCGTTTTATAGGGAACATGAAGTTCCACAGGAAATATGTGCTGCATTCTCCAGACCAGATGATCATAAACAACCATACGGTGGATATAATGGAACAAAAGATGGCAGCTGTAATCATTATCATGATTTACTTGACCATAGTTACCCTGGTGGGAATGAGAAAACATTATCTTGGACAGAAATGCTGAATTCAAGCAAGTTATCATCTGTGATCAAGTTACCAGAACAACATGCATACAAGGCATTTGAAAATGAAAAGCCGTTACCTTCTCCAGGAAGAGAAATGATTGCCAACCAGGAAAACGGTTACTGGCTACACCCCAACAATAATAATGATGAGAATTCTGTCTTTTCATTAACTCAACATATTGTTGGAGTCAACATGTCTCCATATTCTTCGGTAGAAACTCAAGGAACTAATTCTGACTACTATGAAAGATTGTTTGACCAAAGACAAATTCAAGAACCTCTGGATGCATATTCAAGGTTCACTGTTGGACAGAAATTTACAATTACGGCTATCTCCCCAGAATATTGTTATGCCACTGAGGCAACAAAGGTGATCATTATTGGATCTTTTCTTTGCCTTCCCATGGACTCTACCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAAATACTTCAGGATGGCGTAATCTGTTGTGAGGCTCCATCCCATCTTGTTGGAAAGGTTTCTCTGTGCATTACTTCAGGAAATAAGGAACCATGCAGTGAAGTCAAAGAGTTTGAATTTCGTAATATGACCAATGGTTGCACTCACTGTAATAGTTTGGAAACAGAATCTGCCAGAAGTCCAGAAGAGCTGTTATTACTTGTTCGATTTGCAGAAATGCTCCTTTCTACTTCAATTATAAAGGATGACAGCACAGAATCTGGAAGCCATCTTTCAACAGAACAGAAAGCAGATGATGATTCATGGAGCCATATTATAGACGCTCTCCTAGGTGGCAACGGAACTTCATCTGGTACTATTGATTGGATTCTTCAAGAGCTGCTGAAGGATAAGCTGCAGCATTGGCTTTCTTGCAGATCCAATGAACAAGATGAAGGGGCAGGTTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATACACATGGTTTCTGGATTGGATTTTGAGTGGGCCCTGAACCCCATTCTCAGTTGTGGCGTGAATGTTAATTTCCGTGACATCAATGGATGGACTGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCATCGCTTATTGCTGCTGGTGCATTTGCTGGAGCAGTGACAGATCCAACTTCACAAGATCCAAATGGTAAAACTGCTGCATCTATTGCGACCAGCAATGGCCACAAGGGATTGGCAGGTTATCTTGCAGAGGCAGATCTAACAAGTCATCTGTCATCCCTCACATTGGAAAAGTGTGAAGTTCCTAAAGATTCTTCTGAGCTTGAAGCCGAGTTAGCTGTCAGCAGCGTGTCTAAGAAAAATCTCGAAGCCAGTGATGATGAGGTTTCACTAAAGAATACCTTGGGTGCTGTCAGAAATGCATCTCTGGCAGCTGCACGGATACAGGCTGCTTTTCGTGCACATTCTTTCAAAAAACGGTTAGAGAGAGAAGCTTCCTCCACCACTTGTCTAAATGGATATGTCAATGGTGTAGGCAGCATTGGTGGATATGCTAGGAGCTTGCGTGATTGCAATTCAGCTGCCCTGTCAATTCAGAAGAAGTATCGGGGTTGGAAAGGTCGCAAAGAGTTCTTAGTTTTGCGCCAAAAAGTTGTAAAGATACAGGCTCATGTGAGGGGTTACCAGACTCGGAAGCAATACAAGGTGGTGATATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGGAGAAAAAGGGTTGGTTTGCGAAGCTCTCACCAAGAAAATGATTCAAAAGAAGAAAGTGACGATGAGGATTTTCTCAAGGTGTTCAGGCAAGAGAAAGTGCATGCAGCAATTGAAAAGGCTTTGGCACGGGTGCGTTCCATGGTCCGTTCTGCGCATGCTCGTCAGCAATATAATCGCCTGCTTGAGATGTATCGTCAAGCCAAGGCTGAAACACTTAAATCAACTTCTTTAGAGACAGCTTGGAATATTGAAGAAGATGAAACACTTTTATCAACTTCTTTAGAGACAGCTTGGAATATTGAAGAAGATGAAACACTTTTATCAACTTCTTTAGAGAATGCTTGGAATATTGAAGAAGATGATGATTTATATCAATTTCCATGGGAAACACTCTAG 2946 0.4199 MLPGLHYNISDLFQEAKKRWLKPIEVFYILKNHDMCEFTDMPLNRPRGGAVYLFNKRVMRFFRKDGHNWRKKKDGRTVAEAHERLKVGNVEALNCYYAHGEENRSFQRRSYWMLNPEYEHVVLVHYRDTNEGTSNSGPATQLSPFSQSRSSYTTQNPETTSIVGDSSEPNQNFSSPGSLEVTSDIVIMNNGMDHLEKTNAQAFRQLEEQLSLNDDSFTEISPFYREHEVPQEICAAFSRPDDHKQPYGGYNGTKDGSCNHYHDLLDHSYPGGNEKTLSWTEMLNSSKLSSVIKLPEQHAYKAFENEKPLPSPGREMIANQENGYWLHPNNNNDENSVFSLTQHIVGVNMSPYSSVETQGTNSDYYERLFDQRQIQEPLDAYSRFTVGQKFTITAISPEYCYATEATKVIIIGSFLCLPMDSTWACMFGDVEVPAEILQDGVICCEAPSHLVGKVSLCITSGNKEPCSEVKEFEFRNMTNGCTHCNSLETESARSPEELLLLVRFAEMLLSTSIIKDDSTESGSHLSTEQKADDDSWSHIIDALLGGNGTSSGTIDWILQELLKDKLQHWLSCRSNEQDEGAGCSLSKKEQGIIHMVSGLDFEWALNPILSCGVNVNFRDINGWTALHWAARFGREKMVASLIAAGAFAGAVTDPTSQDPNGKTAASIATSNGHKGLAGYLAEADLTSHLSSLTLEKCEVPKDSSELEAELAVSSVSKKNLEASDDEVSLKNTLGAVRNASLAAARIQAAFRAHSFKKRLEREASSTTCLNGYVNGVGSIGGYARSLRDCNSAALSIQKKYRGWKGRKEFLVLRQKVVKIQAHVRGYQTRKQYKVVIWAVGILDKVVLRWRRKRVGLRSSHQENDSKEESDDEDFLKVFRQEKVHAAIEKALARVRSMVRSAHARQQYNRLLEMYRQAKAETLKSTSLETAWNIEEDETLLSTSLETAWNIEEDETLLSTSLENAWNIEEDDDLYQFPWETL 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03108 981 Gene3D - 789 835 - -
Trre6g03108 981 ProSiteProfiles IQ motif profile. 887 916 IPR000048 GO:0005515
Trre6g03108 981 SUPERFAMILY Ankyrin repeat 593 683 IPR036770 -
Trre6g03108 981 FunFam Calmodulin-binding transcription activator 4 isoform A 501 686 - -
Trre6g03108 981 Coils Coil 900 920 - -
Trre6g03108 981 SUPERFAMILY E set domains 391 475 IPR014756 -
Trre6g03108 981 SMART ANK_2a 660 689 IPR002110 GO:0005515
Trre6g03108 981 SMART ANK_2a 621 653 IPR002110 GO:0005515
Trre6g03108 981 SMART iq_5 811 833 IPR000048 GO:0005515
Trre6g03108 981 SMART iq_5 738 760 IPR000048 GO:0005515
Trre6g03108 981 SMART iq_5 788 810 IPR000048 GO:0005515
Trre6g03108 981 Gene3D - 559 691 IPR036770 -
Trre6g03108 981 ProSiteProfiles IQ motif profile. 739 767 IPR000048 GO:0005515
Trre6g03108 981 Gene3D Immunoglobulins 385 479 IPR013783 -
Trre6g03108 981 ProSiteProfiles IQ motif profile. 812 836 IPR000048 GO:0005515
Trre6g03108 981 CDD IPT 391 475 - -
Trre6g03108 981 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Trre6g03108 981 Pfam IQ calmodulin-binding motif 791 809 IPR000048 GO:0005515
Trre6g03108 981 Pfam IQ calmodulin-binding motif 814 833 IPR000048 GO:0005515
Trre6g03108 981 ProSiteProfiles Ankyrin repeat profile. 621 653 IPR002110 GO:0005515
Trre6g03108 981 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 926 - -
Trre6g03108 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 839 IPR027417 -
Trre6g03108 981 SMART CG_1_2 12 130 IPR005559 GO:0003677
Trre6g03108 981 Pfam IPT/TIG domain 391 467 IPR002909 -
Trre6g03108 981 Pfam Ankyrin repeats (3 copies) 607 685 IPR002110 GO:0005515
Trre6g03108 981 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Trre6g03108 981 ProSiteProfiles Ankyrin repeat region circular profile. 621 646 - -
Trre6g03108 981 FunFam Calmodulin-binding transcription activator 2 788 836 - -
Trre6g03108 981 MobiDBLite consensus disorder prediction 129 178 - -
Trre6g03108 981 ProSiteProfiles IQ motif profile. 790 818 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03108 Trre-Chr6 28604603 28613731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03108 5 927 CAMTA Transcription Factor Family AT1G67310 49.487 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre6g03108 CG-1 5.1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03108 K21596 - gmx:100791430 1245.72