Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03099 ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATTGAGAACAAAATCAACAGACAAGTTACCTTTGCAAAAAGAAGGAATGGTCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCAATAGAGGAAAACTCTACGAGTTTTGCAGCACTTCTAGCATGCTCAAAACTCTTGAGAGGTATCAGAAATGCAACTATGGAGCACCCGAAGCTAATGTGACATCAAAGGAAGCTTTGGTATTGGAATTAAGCGGTCAACAAGAATACTTGAAGCTTAAGGCACGTTATGAATCTCTACAACGCTCTCAAAGGAATCTTATGGGAGAAGATCTTGGCCCTCTGAGTAGCAAAGATCTTGAAACACTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTTGGTGATCTTCAACGTAAGGAACACTTGCTATGTGAAGCAAACAGAGCTCTCAGACAAAGGATGGAAGGGTATCAAATAAATTCTCTCCAACTGAATCTGAGTGCTGAAGATATGGGATATGGCCGTCAACATCCAGTTCACACCCAGGGTGATGATCTGTTTCAACCAATTGAGTGTGAACCAACCTTACAAATTGGATATCAAGCTGATCCAGGATCAGTGGTGACAGCAGGCCCAAGCATGAATAATTTCATGGGTGGATGGTTACCATGA 735 0.4204 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEANVTSKEALVLELSGQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRQHPVHTQGDDLFQPIECEPTLQIGYQADPGSVVTAGPSMNNFMGGWLP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03099 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre6g03099 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre6g03099 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g03099 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre6g03099 244 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Trre6g03099 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre6g03099 244 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre6g03099 244 Coils Coil 128 148 - -
Trre6g03099 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g03099 244 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Trre6g03099 244 FunFam MADS-box transcription factor 7 13 100 - -
Trre6g03099 244 Pfam K-box region 95 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre6g03099 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre6g03099 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Trre6g03099 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03099 Trre-Chr6 28399360 28403094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03099 1 244 MADS-box Gene Family AT1G24260 71.545 7.18e-117 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre6g03099 K-box 2.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03099 - - gmx:100778931 417.542