Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03085 ATGGTTTCAATTTCAGTTTTCCTCAAATTTCGTAGAATCTTTTACACAATAGAACCTACATATGGTGCCTTGAGACACTGTCATTTTGGGGCTAGTAGCCAGAATGAGAAGCTATGTAGAGTGGGGATTTTCTGGGATTTGGATAACAAACCACCCAATTCAATTCCACCTTATGAAGTTGCCAATAAGCTGAGAATAGCTGCAGCTTCATTTGGTGTTGTTCGGTATATGGTGGCATATGCAAATAGCCACACGTTTAGCTATGTTCCTCATGTTGTTCGGGAGATGAGGAAAGAGCGACAATTGTTATTTCGTTTGGAAGATAAGGGTGTGATCAAGCGTAATGAGCCTCATATTTGTTGTGTTTGTGGGAGAAAATTTTATACTAATGAAAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGTGAGCATGTGAAAAGGGTGAATCAGATTGATTCGGCTAGAGGGAGTAGGAAGGTGAAATTGGTGGGTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCGAGTGCTGTTCTGACTCCCAAAGTTGGGTATGGTTTGGCGGATGAGCTGAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTGGATAGGCCGCAAGCTGCGGATATTGCGTTGCAAAAGCATATAGTGGATATGATGGATCATAGGCGGGTTGAGTGTGTGGTTCTTGTATCCGATGATTCTGATTTTGTTGATGTAATAAAGGAGGCAAAATTACGGTGTCTCAAGACTGTTGTTATTGGGGATATTAGTAGTGACGGAGTCTTGAAAAGGACTGCTGATACTGCCTTTTCTTGGGAGGAAATTTTGACGGGGAAGGCCAAGAAGGAGGCTTGGAAAGATCGTGATATATTGAAAAGGTTGGAGTGGACATACAATCATGACGTGGATAAAAAGAAACTCAACCTAGATGATGCAGTTGCTGAAACATCTGGAGATGATGATATTGAAGATATCTTCAATGATGTTGATGATGACTACAAGGATGACAGAGGTTCTTGGTGGGAATTAGACTCCGATGATAATGATGTTAGAACTGGATAA 1074 0.4115 MVSISVFLKFRRIFYTIEPTYGALRHCHFGASSQNEKLCRVGIFWDLDNKPPNSIPPYEVANKLRIAAASFGVVRYMVAYANSHTFSYVPHVVREMRKERQLLFRLEDKGVIKRNEPHICCVCGRKFYTNEKLVNHFKQLHEREHVKRVNQIDSARGSRKVKLVGKYSMKMEKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDRPQAADIALQKHIVDMMDHRRVECVVLVSDDSDFVDVIKEAKLRCLKTVVIGDISSDGVLKRTADTAFSWEEILTGKAKKEAWKDRDILKRLEWTYNHDVDKKKLNLDDAVAETSGDDDIEDIFNDVDDDYKDDRGSWWELDSDDNDVRTG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03085 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 146 IPR013087 -
Trre6g03085 357 Pfam NYN domain 191 273 IPR021139 GO:0004540
Trre6g03085 357 ProSitePatterns Zinc finger C2H2 type domain signature. 120 141 IPR013087 -
Trre6g03085 357 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 35 354 - -
Trre6g03085 357 CDD PIN_LabA-like 128 259 - -
Trre6g03085 357 Gene3D - 31 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03085 Trre-Chr6 28153096 28154169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03085 16 352 C2H2 Transcription Factor Family AT4G12240 56.812 1.97e-133 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g03085 NYN 6.7e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03085 - - tpra:123908087 626.32