Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre6g03064 | ATGGCTCCCCCAAAATCAAAACTCAAAACCCTAATTTCTCTCTCTAAACTCTTCCTTTCTTTCTCTCTCCTCCTCCACACCGCCATTGCCGACGATGGCGTCTTCATGTCCAAGCTTGCAAAAGCCCTTACTCCAACTCCCTCAGGTTGGTCGTCGACAACCACATTCTGCAACTGGACCGGCATCAAATGCGACGGTTCAAACCGAGTAACATCGATCAACTTAGCTTCCAAATCACTCACCGGAACACTACCTTCCGATCTGAACTCACTGTCTGAACTCACCACACTTTCTCTTCAATCCAACTCTCTCTCCGGCGAGTTACCTTCACTCGCTAACCTCTCAAATCTTCAAACGGTTTTCCTCGGAAACAACAACTTCACTTCAATCGCTAAAGGTTGCTTCGAAGGACTCACCAGTCTCCAGAAACTTATCTTAACTCAGAACCTCAACCTTGCACCGTGGACGATTCCGACTGAGTTGACTCAGTCTTCGAACCTAGTCGAACTTGACCTTGGTCAAACGAATCTCATAGGTTCGTTGCCGGATATATTCGATCCATTGGTTAGTTTGCAGAAACTCCGTCTTTCTTACAACAACCTCACCGGAGATTTACCCAAGTCATTCTCCGGATCTGGGATTCAGAATTTGTGGCTTAACAATCAGCAAGATGATTTTGGGTTTACCGGTTCTATTGATTTGCTTTCTTCGATGTCACATTTGGCTCAAGTTTGGTTTCAGAAGAACAAGTTCACTGGTCCAATACCTGATTTATCAAACTGTACTAATTTGTTTGATTTGCAGCTTCGTGATAATCAGTTAACAGGTGTTGTTCCGTCTTCTTTGATGAGTTTATCTAGCTTGACGAATGTTTCGTTGGATAATAACAAGTTGCAGGGTCCTTTTCCTTCTTTTGGGAAAGGTGTAAAGGTTACTCTTGATGATGGGATTAATAGCTTTTGTGGAAAAACTCCTGGACCTTGTGATCCTAGGGTTACAACTTTGCTTGATATTGCTGCTGGTTTTGGATATCCTCTTCAGTTGGCTAGTTCTTGGAGAGGGAATGATCCTTGTGCAGATTGGAGCTTTGTTGTGTGTTCAGGATCGAAGATTATTACAATCAATTTAGCAAAGCAGCATTTGAATGGGACCATTTCACCTGCATTTGGGAATTTAACTGATTTGAGGAATTTGTATTTAGATGGTAATAATTTGTCAGGTTCGATACCGGGGAGTTTGACGGGTTTGACTCAACTTGAGGTTTTGGATGTGTCTAACAACAATCTATCCGGAGATATTCCTAAGTTTCCGACTAAATTGAAGTTCAATTCTGCTGGTAATGTTTTGCTTGGGCATTCGGAAAGTGGTGGAGGAAGTGGGACTACTCCAACGGATTCCAGTGGTGCTCCGAATGGAAGTCCATCAGGAAAGGCAAGTGGTTCTTCACTTTCAGCTGGTTGGATCGCAGGTATAGCTGTTATTGTTGTGTTTTTTGTTGCAGTGGTGTTGTTTGTGTTTTGTAAGTGTTATACCAAGAACCGGAGGCATGGGAAATTCGGAAGGGTTAATAATCCTGAAAATGGTAAAGGTGATGTTAAAATTGATGTTATGAGTGTTTCTAATTCTAATGGATATGGTGGAGTTGCAAGTGAGTTACAGAGTCAGGGAAGTGAGCGCAGTGACATTCAGGTTTTTGAGGGTGGAAATGTTACTATTTCAATCCAAGTTCTTAGGCAAGTAACCGGTAATTTCAGTGAAGACAACATTTTGGGTAGGGGAGGATTCGGAGTTGTTTATAAAGGGGAATTGCATGATGGAACTAAGATTGCTGTGAAGAGGATGGAATCTGTTGCAGTGGGAACTAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTAACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATTCTGCATAAATGGCCATGAAAGGCTTTTGGTGTACGAGTATATGCCACAAGGAACATTAACACAACATCTGTTTGATTGGGGTGAAAATGGATGTGCTCCTTTGACTTGGAAACAGAGGGTAGCGATAGCTTTGGATGTAGCTCGGGGAGTGGAATACTTGCACAGCTTAGCTCAACAAAGCTTCATTCACAGGGACTTAAAACCCTCCAACATACTATTGGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCGGATGGCAAATATTCCGTCGAGACAAGGTTGGCTGGAACATTTGGATATCTGGCACCTGAATATGCAGCCACTGGAAGAGTGACAACCAAAGTAGATGTTTACGCATTTGGAGTAGTTCTGATGGAACTAATTACTGGTAGAAGGGCATTGGACGATTCTATGCCTGACGAAAGATCGCATTTGGTTTCATGGTTCCGTAGGGTACTAGTAAACAAGGAGAACATCCCTAAGGCAATCGATCAAACACTGAACCCTGACGAAGAAACCATGGAGAGCATATATAAAATTGCTGAGCTTGCAGGCCATTGCACTGCTCGCGAACCACACCAGAGACCAGATATGGGACATGCAGTGAATGTTCTCGTTCCTCTAGTAGAGCAATGGAAGCCTAGCAACCATGAAGAAGAAGATGGTTATGGTATTGACCTTCACTTGAGCCTTCCTCAAGCTCTGCAAAGATGGCAAGCCAATGAAGGCACTTCCACAATGTTTAATGACATGTCTTTCTCACAAACCCAATCAAGTATTCCATCAAAACCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTAA | 2799 | 0.4291 | MAPPKSKLKTLISLSKLFLSFSLLLHTAIADDGVFMSKLAKALTPTPSGWSSTTTFCNWTGIKCDGSNRVTSINLASKSLTGTLPSDLNSLSELTTLSLQSNSLSGELPSLANLSNLQTVFLGNNNFTSIAKGCFEGLTSLQKLILTQNLNLAPWTIPTELTQSSNLVELDLGQTNLIGSLPDIFDPLVSLQKLRLSYNNLTGDLPKSFSGSGIQNLWLNNQQDDFGFTGSIDLLSSMSHLAQVWFQKNKFTGPIPDLSNCTNLFDLQLRDNQLTGVVPSSLMSLSSLTNVSLDNNKLQGPFPSFGKGVKVTLDDGINSFCGKTPGPCDPRVTTLLDIAAGFGYPLQLASSWRGNDPCADWSFVVCSGSKIITINLAKQHLNGTISPAFGNLTDLRNLYLDGNNLSGSIPGSLTGLTQLEVLDVSNNNLSGDIPKFPTKLKFNSAGNVLLGHSESGGGSGTTPTDSSGAPNGSPSGKASGSSLSAGWIAGIAVIVVFFVAVVLFVFCKCYTKNRRHGKFGRVNNPENGKGDVKIDVMSVSNSNGYGGVASELQSQGSERSDIQVFEGGNVTISIQVLRQVTGNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTKGLNEFQAEIAVLTKVRHRHLVALLGFCINGHERLLVYEYMPQGTLTQHLFDWGENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDSMPDERSHLVSWFRRVLVNKENIPKAIDQTLNPDEETMESIYKIAELAGHCTAREPHQRPDMGHAVNVLVPLVEQWKPSNHEEEDGYGIDLHLSLPQALQRWQANEGTSTMFNDMSFSQTQSSIPSKPSGFADSFDSMDCR | 932 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre6g03064 | 932 | SUPERFAMILY | Protein kinase-like (PK-like) | 561 | 860 | IPR011009 | - | |
Trre6g03064 | 932 | Gene3D | Ribonuclease Inhibitor | 34 | 328 | IPR032675 | - | |
Trre6g03064 | 932 | Gene3D | Phosphorylase Kinase; domain 1 | 546 | 661 | - | - | |
Trre6g03064 | 932 | Pfam | Leucine rich repeat N-terminal domain | 38 | 65 | IPR013210 | - | |
Trre6g03064 | 932 | Pfam | Leucine rich repeat N-terminal domain | 333 | 367 | IPR013210 | - | |
Trre6g03064 | 932 | Gene3D | Ribonuclease Inhibitor | 330 | 453 | IPR032675 | - | |
Trre6g03064 | 932 | Pfam | Leucine rich repeat | 93 | 149 | IPR001611 | GO:0005515 | |
Trre6g03064 | 932 | Pfam | Leucine rich repeat | 373 | 429 | IPR001611 | GO:0005515 | |
Trre6g03064 | 932 | FunFam | Leucine-rich repeat receptor-like kinase | 330 | 453 | - | - | |
Trre6g03064 | 932 | ProSiteProfiles | Protein kinase domain profile. | 584 | 864 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre6g03064 | 932 | Pfam | Protein tyrosine and serine/threonine kinase | 587 | 858 | IPR001245 | GO:0004672|GO:0006468 | |
Trre6g03064 | 932 | FunFam | receptor protein kinase TMK1 | 547 | 661 | - | - | |
Trre6g03064 | 932 | PANTHER | OSJNBA0070M12.3 PROTEIN | 17 | 932 | - | - | |
Trre6g03064 | 932 | SMART | serkin_6 | 584 | 864 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre6g03064 | 932 | Gene3D | Transferase(Phosphotransferase) domain 1 | 662 | 883 | - | - | |
Trre6g03064 | 932 | MobiDBLite | consensus disorder prediction | 453 | 476 | - | - | |
Trre6g03064 | 932 | FunFam | Receptor-like kinase TMK4 | 30 | 326 | - | - | |
Trre6g03064 | 932 | SMART | LRR_typ_2 | 114 | 137 | IPR003591 | - | |
Trre6g03064 | 932 | SMART | LRR_typ_2 | 392 | 415 | IPR003591 | - | |
Trre6g03064 | 932 | SMART | LRR_typ_2 | 188 | 211 | IPR003591 | - | |
Trre6g03064 | 932 | SMART | LRR_typ_2 | 416 | 439 | IPR003591 | - | |
Trre6g03064 | 932 | MobiDBLite | consensus disorder prediction | 909 | 932 | - | - | |
Trre6g03064 | 932 | ProSitePatterns | Protein kinases ATP-binding region signature. | 590 | 612 | IPR017441 | GO:0005524 | |
Trre6g03064 | 932 | FunFam | receptor protein kinase TMK1 | 662 | 879 | - | - | |
Trre6g03064 | 932 | CDD | STKc_IRAK | 590 | 863 | - | - | |
Trre6g03064 | 932 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 709 | 721 | IPR008271 | GO:0004672|GO:0006468 | |
Trre6g03064 | 932 | ProSiteProfiles | Leucine-rich repeat profile. | 93 | 115 | IPR001611 | GO:0005515 | |
Trre6g03064 | 932 | SUPERFAMILY | L domain-like | 43 | 436 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre6g03064 | Trre-Chr6 | 27870908 | 27874906 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre6g03064 | 70 | 860 | Receptor kinase-like Gene Family | AT5G07280 | 32.432 | 2.46e-95 | 324 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-IX | Trre6g03064 | PK_Tyr_Ser-Thr | 1.4e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre6g03064 | - | - | gmx:100781851 | 1435.62 |