Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03064 ATGGCTCCCCCAAAATCAAAACTCAAAACCCTAATTTCTCTCTCTAAACTCTTCCTTTCTTTCTCTCTCCTCCTCCACACCGCCATTGCCGACGATGGCGTCTTCATGTCCAAGCTTGCAAAAGCCCTTACTCCAACTCCCTCAGGTTGGTCGTCGACAACCACATTCTGCAACTGGACCGGCATCAAATGCGACGGTTCAAACCGAGTAACATCGATCAACTTAGCTTCCAAATCACTCACCGGAACACTACCTTCCGATCTGAACTCACTGTCTGAACTCACCACACTTTCTCTTCAATCCAACTCTCTCTCCGGCGAGTTACCTTCACTCGCTAACCTCTCAAATCTTCAAACGGTTTTCCTCGGAAACAACAACTTCACTTCAATCGCTAAAGGTTGCTTCGAAGGACTCACCAGTCTCCAGAAACTTATCTTAACTCAGAACCTCAACCTTGCACCGTGGACGATTCCGACTGAGTTGACTCAGTCTTCGAACCTAGTCGAACTTGACCTTGGTCAAACGAATCTCATAGGTTCGTTGCCGGATATATTCGATCCATTGGTTAGTTTGCAGAAACTCCGTCTTTCTTACAACAACCTCACCGGAGATTTACCCAAGTCATTCTCCGGATCTGGGATTCAGAATTTGTGGCTTAACAATCAGCAAGATGATTTTGGGTTTACCGGTTCTATTGATTTGCTTTCTTCGATGTCACATTTGGCTCAAGTTTGGTTTCAGAAGAACAAGTTCACTGGTCCAATACCTGATTTATCAAACTGTACTAATTTGTTTGATTTGCAGCTTCGTGATAATCAGTTAACAGGTGTTGTTCCGTCTTCTTTGATGAGTTTATCTAGCTTGACGAATGTTTCGTTGGATAATAACAAGTTGCAGGGTCCTTTTCCTTCTTTTGGGAAAGGTGTAAAGGTTACTCTTGATGATGGGATTAATAGCTTTTGTGGAAAAACTCCTGGACCTTGTGATCCTAGGGTTACAACTTTGCTTGATATTGCTGCTGGTTTTGGATATCCTCTTCAGTTGGCTAGTTCTTGGAGAGGGAATGATCCTTGTGCAGATTGGAGCTTTGTTGTGTGTTCAGGATCGAAGATTATTACAATCAATTTAGCAAAGCAGCATTTGAATGGGACCATTTCACCTGCATTTGGGAATTTAACTGATTTGAGGAATTTGTATTTAGATGGTAATAATTTGTCAGGTTCGATACCGGGGAGTTTGACGGGTTTGACTCAACTTGAGGTTTTGGATGTGTCTAACAACAATCTATCCGGAGATATTCCTAAGTTTCCGACTAAATTGAAGTTCAATTCTGCTGGTAATGTTTTGCTTGGGCATTCGGAAAGTGGTGGAGGAAGTGGGACTACTCCAACGGATTCCAGTGGTGCTCCGAATGGAAGTCCATCAGGAAAGGCAAGTGGTTCTTCACTTTCAGCTGGTTGGATCGCAGGTATAGCTGTTATTGTTGTGTTTTTTGTTGCAGTGGTGTTGTTTGTGTTTTGTAAGTGTTATACCAAGAACCGGAGGCATGGGAAATTCGGAAGGGTTAATAATCCTGAAAATGGTAAAGGTGATGTTAAAATTGATGTTATGAGTGTTTCTAATTCTAATGGATATGGTGGAGTTGCAAGTGAGTTACAGAGTCAGGGAAGTGAGCGCAGTGACATTCAGGTTTTTGAGGGTGGAAATGTTACTATTTCAATCCAAGTTCTTAGGCAAGTAACCGGTAATTTCAGTGAAGACAACATTTTGGGTAGGGGAGGATTCGGAGTTGTTTATAAAGGGGAATTGCATGATGGAACTAAGATTGCTGTGAAGAGGATGGAATCTGTTGCAGTGGGAACTAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTAACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATTCTGCATAAATGGCCATGAAAGGCTTTTGGTGTACGAGTATATGCCACAAGGAACATTAACACAACATCTGTTTGATTGGGGTGAAAATGGATGTGCTCCTTTGACTTGGAAACAGAGGGTAGCGATAGCTTTGGATGTAGCTCGGGGAGTGGAATACTTGCACAGCTTAGCTCAACAAAGCTTCATTCACAGGGACTTAAAACCCTCCAACATACTATTGGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCGGATGGCAAATATTCCGTCGAGACAAGGTTGGCTGGAACATTTGGATATCTGGCACCTGAATATGCAGCCACTGGAAGAGTGACAACCAAAGTAGATGTTTACGCATTTGGAGTAGTTCTGATGGAACTAATTACTGGTAGAAGGGCATTGGACGATTCTATGCCTGACGAAAGATCGCATTTGGTTTCATGGTTCCGTAGGGTACTAGTAAACAAGGAGAACATCCCTAAGGCAATCGATCAAACACTGAACCCTGACGAAGAAACCATGGAGAGCATATATAAAATTGCTGAGCTTGCAGGCCATTGCACTGCTCGCGAACCACACCAGAGACCAGATATGGGACATGCAGTGAATGTTCTCGTTCCTCTAGTAGAGCAATGGAAGCCTAGCAACCATGAAGAAGAAGATGGTTATGGTATTGACCTTCACTTGAGCCTTCCTCAAGCTCTGCAAAGATGGCAAGCCAATGAAGGCACTTCCACAATGTTTAATGACATGTCTTTCTCACAAACCCAATCAAGTATTCCATCAAAACCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTAA 2799 0.4291 MAPPKSKLKTLISLSKLFLSFSLLLHTAIADDGVFMSKLAKALTPTPSGWSSTTTFCNWTGIKCDGSNRVTSINLASKSLTGTLPSDLNSLSELTTLSLQSNSLSGELPSLANLSNLQTVFLGNNNFTSIAKGCFEGLTSLQKLILTQNLNLAPWTIPTELTQSSNLVELDLGQTNLIGSLPDIFDPLVSLQKLRLSYNNLTGDLPKSFSGSGIQNLWLNNQQDDFGFTGSIDLLSSMSHLAQVWFQKNKFTGPIPDLSNCTNLFDLQLRDNQLTGVVPSSLMSLSSLTNVSLDNNKLQGPFPSFGKGVKVTLDDGINSFCGKTPGPCDPRVTTLLDIAAGFGYPLQLASSWRGNDPCADWSFVVCSGSKIITINLAKQHLNGTISPAFGNLTDLRNLYLDGNNLSGSIPGSLTGLTQLEVLDVSNNNLSGDIPKFPTKLKFNSAGNVLLGHSESGGGSGTTPTDSSGAPNGSPSGKASGSSLSAGWIAGIAVIVVFFVAVVLFVFCKCYTKNRRHGKFGRVNNPENGKGDVKIDVMSVSNSNGYGGVASELQSQGSERSDIQVFEGGNVTISIQVLRQVTGNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTKGLNEFQAEIAVLTKVRHRHLVALLGFCINGHERLLVYEYMPQGTLTQHLFDWGENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDSMPDERSHLVSWFRRVLVNKENIPKAIDQTLNPDEETMESIYKIAELAGHCTAREPHQRPDMGHAVNVLVPLVEQWKPSNHEEEDGYGIDLHLSLPQALQRWQANEGTSTMFNDMSFSQTQSSIPSKPSGFADSFDSMDCR 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03064 932 SUPERFAMILY Protein kinase-like (PK-like) 561 860 IPR011009 -
Trre6g03064 932 Gene3D Ribonuclease Inhibitor 34 328 IPR032675 -
Trre6g03064 932 Gene3D Phosphorylase Kinase; domain 1 546 661 - -
Trre6g03064 932 Pfam Leucine rich repeat N-terminal domain 38 65 IPR013210 -
Trre6g03064 932 Pfam Leucine rich repeat N-terminal domain 333 367 IPR013210 -
Trre6g03064 932 Gene3D Ribonuclease Inhibitor 330 453 IPR032675 -
Trre6g03064 932 Pfam Leucine rich repeat 93 149 IPR001611 GO:0005515
Trre6g03064 932 Pfam Leucine rich repeat 373 429 IPR001611 GO:0005515
Trre6g03064 932 FunFam Leucine-rich repeat receptor-like kinase 330 453 - -
Trre6g03064 932 ProSiteProfiles Protein kinase domain profile. 584 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03064 932 Pfam Protein tyrosine and serine/threonine kinase 587 858 IPR001245 GO:0004672|GO:0006468
Trre6g03064 932 FunFam receptor protein kinase TMK1 547 661 - -
Trre6g03064 932 PANTHER OSJNBA0070M12.3 PROTEIN 17 932 - -
Trre6g03064 932 SMART serkin_6 584 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03064 932 Gene3D Transferase(Phosphotransferase) domain 1 662 883 - -
Trre6g03064 932 MobiDBLite consensus disorder prediction 453 476 - -
Trre6g03064 932 FunFam Receptor-like kinase TMK4 30 326 - -
Trre6g03064 932 SMART LRR_typ_2 114 137 IPR003591 -
Trre6g03064 932 SMART LRR_typ_2 392 415 IPR003591 -
Trre6g03064 932 SMART LRR_typ_2 188 211 IPR003591 -
Trre6g03064 932 SMART LRR_typ_2 416 439 IPR003591 -
Trre6g03064 932 MobiDBLite consensus disorder prediction 909 932 - -
Trre6g03064 932 ProSitePatterns Protein kinases ATP-binding region signature. 590 612 IPR017441 GO:0005524
Trre6g03064 932 FunFam receptor protein kinase TMK1 662 879 - -
Trre6g03064 932 CDD STKc_IRAK 590 863 - -
Trre6g03064 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Trre6g03064 932 ProSiteProfiles Leucine-rich repeat profile. 93 115 IPR001611 GO:0005515
Trre6g03064 932 SUPERFAMILY L domain-like 43 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03064 Trre-Chr6 27870908 27874906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03064 70 860 Receptor kinase-like Gene Family AT5G07280 32.432 2.46e-95 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre6g03064 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03064 - - gmx:100781851 1435.62