Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03058 ATGTTCTTTATAGGTTATAATGAATTCTGCTTTGTGCTTTCTTCATCTGTTTTGTATTTGCAGCTGACTATGTGGGACTTGAGAATGAAAGAAAACGGTGGTTGTGTTCATCAGATTAGTGGTACCCCTGGTGATACCTTATATTCTGTTTGCAGTTCTTCCACTGGTAATATTGTCGTTGGTGGGGTTGATCGTACAGTGACTATTTATGATCCTCGCAGATGGTCCTCATTGTCTAGATGGGTGCATTGTTCAAAATTTGAGGTGATTTTGATCTCATTCTCAACTTGGCTTGCCTGGTTTTTAGCTGGAAAATATCATGCTTACCTGAAATCGTGGATATCGTCTTCCATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATATCTGTCATTGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACGCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCATCTCAGGGTGTATTGATCAAAGGGGGGCAAGCTTTGGAAAGTGCACATAAGGTAAATTGCATTGTTTTTGACAAGACGGGTACTCTCACTATTGGGAAACCGGTAATAGTAAATACCAAACTATTGACAAAAATGGTGCTCCGGGAATTCTATGAACTTGTGGCTGCAGCAGACGTAAGCACATGCCCCCCATCTCCTTGTAAAAGCCTTAGCCTCAGTAATAGTTATAGAGAACAGTTGTTTTCCTATTAA 720 0.4181 MFFIGYNEFCFVLSSSVLYLQLTMWDLRMKENGGCVHQISGTPGDTLYSVCSSSTGNIVVGGVDRTVTIYDPRRWSSLSRWVHCSKFEVILISFSTWLAWFLAGKYHAYLKSWISSSMDSFELALQFGISVIVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLTKMVLREFYELVAAADVSTCPPSPCKSLSLSNSYREQLFSY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03058 239 SUPERFAMILY Calcium ATPase, transmembrane domain M 84 170 IPR023298 -
Trre6g03058 239 ProSitePatterns E1-E2 ATPases phosphorylation site. 180 186 IPR018303 -
Trre6g03058 239 SUPERFAMILY WD40 repeat-like 22 113 IPR036322 GO:0005515
Trre6g03058 239 Gene3D - 145 216 IPR023214 -
Trre6g03058 239 Gene3D - 8 124 IPR015943 GO:0005515
Trre6g03058 239 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 89 217 - -
Trre6g03058 239 Pfam E1-E2 ATPase 89 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03058 Trre-Chr6 27766850 27768329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03058 89 235 Primary Pumps ATPases AT1G63440 76.871 3.40e-71 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03058 K17686 - gmx:100810141 237.269