Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03046 ATGGAGAGTTCGACGACGGGTTCAGGCGGCGGTGGTGGTAGTCCAGCACCTTTCCTAGTGAAAACGTACGAGATGGTTGATGATTCGTGTACAGATGAGATAGTATCATGGAGTGAAAGTAACAACAGTTTCATCGTATGGAATCCAACTGAATTTGCTCGTCTTCTTCTTCGTAATTATTTCAAACACAACAATTTCTCCAGCTTCATTCGTCAGCTTAATACTTATGGATTTCGAAAAATACATCATGAGCAATGGGAGTTTGCTAATGAATATTTTGTGAAAGATCAAAAGCATCTTCTTAACAGGATTCACCGTAAGAAACCAATTCACAGTCACAATAATTCACAAGGCTCTCATGTAGATCCAGAAAGATTAGCATTTGAAGAAGAAATAGAGAAACTTTCAAATGAGAAAACTACTATTCAATCCAATATTTCAAACTTCAAGCAAAATATATCAACCGCAAAGCTTCATTTGGAAGAACTGCAACAACGATTAGACGGCATGGAGAAGAGGCAGAAAAACTTGTTGAACTTATTTGAAAAGGAACTTCAGAATCCTAAATTTGTTGAACAAATTTATCAGAAAATCGAGTCATTAAATTTATCAGGACACAACAAGAAAAGGCGAATTCCTCATGTTGCTGAAAATAGTTTTGTTGACAACGATAGCAATTTTGGAATAACGGAAGTTGGAAATATGAATATTTTCCGTGAAGATTTCTGCAGTAAACTCAACTTGTTATCAACTACTAGTTCAAATGAAGATGGAGAAAGCGCACATAATAAGATGTTGTGCGAAGGAGAATTACCGAAAGAAACTCTTACATTTGCATCTCCTTCAGTCAATTCTATCTCAGAGCATACCGATAATGGAGCATGCTTCACTTTTGATATGGATTCATGCTTATCACAAAGTGGAAAATTGAACTCCTCGGAACCGAAGAGCGCAGAAAGTGATTGTGATCAAATATGCTGTCTTTTAAGTCTAACTTTGGCATCTTCTCCAGCAATAGATATATCAGCACAAATAGACTGTCAAGAAATCGGTAAACCAGTCGAATCAAGATTTCATACCAATGATCATAAAGAATGTGATATTGGAGCTTTCTCAAACAGGAATTTGGATAATGTGGTTACAAGTTTAGCTTCCTTAATAGAGTCTCCTAGTAACAACCAAGGGATCCCAGCTGCTCCAGTTAAAGACAGAGTGAATGATCTGTTTTGGTCACAGTACCTTACAGAATGA 1251 0.3677 MESSTTGSGGGGGSPAPFLVKTYEMVDDSCTDEIVSWSESNNSFIVWNPTEFARLLLRNYFKHNNFSSFIRQLNTYGFRKIHHEQWEFANEYFVKDQKHLLNRIHRKKPIHSHNNSQGSHVDPERLAFEEEIEKLSNEKTTIQSNISNFKQNISTAKLHLEELQQRLDGMEKRQKNLLNLFEKELQNPKFVEQIYQKIESLNLSGHNKKRRIPHVAENSFVDNDSNFGITEVGNMNIFREDFCSKLNLLSTTSSNEDGESAHNKMLCEGELPKETLTFASPSVNSISEHTDNGACFTFDMDSCLSQSGKLNSSEPKSAESDCDQICCLLSLTLASSPAIDISAQIDCQEIGKPVESRFHTNDHKECDIGAFSNRNLDNVVTSLASLIESPSNNQGIPAAPVKDRVNDLFWSQYLTE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03046 416 FunFam Heat shock transcription factor 1 11 108 - -
Trre6g03046 416 Gene3D - 13 108 IPR036388 -
Trre6g03046 416 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g03046 416 SUPERFAMILY "Winged helix" DNA-binding domain 14 107 IPR036390 -
Trre6g03046 416 Coils Coil 125 180 - -
Trre6g03046 416 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g03046 416 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g03046 416 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g03046 416 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 247 IPR027725 -
Trre6g03046 416 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g03046 416 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03046 Trre-Chr6 27668488 27670309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03046 18 416 HSF AT4G13980 43.632 8.48e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre6g03046 HSF_DNA-bind 6.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03046 K09419 - gmx:100786408 438.343