Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03041 ATGAGTTCAAAAGAAGAGATGATATCTGGCCATGATGTTGAGAGAAGCCAAGAGCTTCGTTTATTCATGTCACCAACACTACAACTCTTAACACCAGACACAAATATCACCACAAATAACAACAACAAAGCACCATCCTCCCTTGTCGGTCGCCGCCCTCGAGGGCGTCCACCTAGCTTTAAGAATAAGTCATTGGGTCCTATCGTAGAAATACATGCCAACTGCAATTCACTCAATTTTCATGTGCTTGATATCACTCATGGTGCCGACGTGTTAACAAGTCTCTTTGAGTATGCTCGTCGTGGAGGGAAGGACATCTGCATCCTCAATGGAAATGGAATGGCGGCACACGCCATACTTCGTCAACCCACTGGGAGGATTGTCAGCCTTCTGGGAAGATTCAAAATTGTTTTAATATCTGGCACAATTCTCCCATCACCAACAAGTGTTGGAGAATTGACAGTTTTCTTATTAGACAATATTGGACAAGGATTTGGGGGGAGTGTGATGCCCCCTCTTACGGCTTTGAGAACAGTGACATTGATGGCCACCTCCTTTGCAGACGCTACATTTGAGAAGCTGCCTTCATCGGAATGA 597 0.4506 MSSKEEMISGHDVERSQELRLFMSPTLQLLTPDTNITTNNNNKAPSSLVGRRPRGRPPSFKNKSLGPIVEIHANCNSLNFHVLDITHGADVLTSLFEYARRGGKDICILNGNGMAAHAILRQPTGRIVSLLGRFKIVLISGTILPSPTSVGELTVFLLDNIGQGFGGSVMPPLTALRTVTLMATSFADATFEKLPSSE 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03041 198 Gene3D - 79 198 - -
Trre6g03041 198 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 196 IPR014476 GO:0003680
Trre6g03041 198 MobiDBLite consensus disorder prediction 32 63 - -
Trre6g03041 198 MobiDBLite consensus disorder prediction 32 47 - -
Trre6g03041 198 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 187 IPR005175 -
Trre6g03041 198 CDD DUF296 79 186 IPR005175 -
Trre6g03041 198 ProSiteProfiles PPC domain profile profile. 75 198 IPR005175 -
Trre6g03041 198 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03041 Trre-Chr6 27609548 27610144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03041 39 195 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 43.750 2.78e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03041 - - psat:127088334 181.03