Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre6g03035 | ATGGCTTTCTGTAACAAGATTGGAAACCTTTTGAGGCAGGGTGCTACTCAGACCAACCAAGCCCCTGTTTCATCCATGCTTAACTACCTTCGCCACATGTCTTCAAGCAAGCTTTTTGTTGGAGGTCTTTCTTATGGAGTTGATGACCAATCTCTTAGGGATGCATTTGCAACCTATGGAGAGGTGATTGAGGCAAGGGTTATCACTGATAGAGATACTGGGAGATCAAGGGGATTTGGATTTGTCAACTACACCAGTGAGGATGCTGCAGGTCAAGCACTCGCTATGGATGGGCAGGATTTAAATGGGCGACCCATTCGCGTGTCTTATGCAAATGATAGACCTTCTGGACCTCGTCCCGGTGGTGGTGGCGGGTATGGTGGCGGCGGCGGTGGGTATGGTGGTGGCGGCGGCGGTGGTTGGTGA | 426 | 0.5094 | MAFCNKIGNLLRQGATQTNQAPVSSMLNYLRHMSSSKLFVGGLSYGVDDQSLRDAFATYGEVIEARVITDRDTGRSRGFGFVNYTSEDAAGQALAMDGQDLNGRPIRVSYANDRPSGPRPGGGGGYGGGGGGYGGGGGGGW | 141 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre6g03035 | 141 | Gene3D | - | 13 | 141 | IPR012677 | - | |
Trre6g03035 | 141 | SMART | rrm1_1 | 37 | 109 | IPR000504 | GO:0003723 | |
Trre6g03035 | 141 | FunFam | Glycine-rich RNA-binding protein 2 | 25 | 141 | - | - | |
Trre6g03035 | 141 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 33 | 135 | - | - | |
Trre6g03035 | 141 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 38 | 107 | IPR000504 | GO:0003723 | |
Trre6g03035 | 141 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 113 | IPR000504 | GO:0003723 | |
Trre6g03035 | 141 | SUPERFAMILY | RNA-binding domain, RBD | 23 | 140 | IPR035979 | GO:0003676 | |
Trre6g03035 | 141 | CDD | RRM2_NsCP33_like | 37 | 111 | - | - | |
Trre6g03035 | 141 | MobiDBLite | consensus disorder prediction | 110 | 141 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre6g03035 | Trre-Chr6 | 27543479 | 27544461 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre6g03035 | 35 | 126 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 40.860 | 3.78e-14 | 66.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre6g03035 | - | - | gmx:100527220 | 189.119 |