LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g03027	ATGAGCATAAATTCAAATTATACTTTATTTCATTCAGTTACCAGATTGAATCAAACCAGCTATGAAGTTTGTTTTGATGCTCCACCCCATATTGTTTCAGATGGTTTATGGGGTGGTAAAGAAAATGGAAGAACTCCAATGAGATCTTTCTTTCCCATGTTTGAATTACAAGTTCTTATAATTTTTATCCTCACTCAAATTTGCAGTTTCCTTCTCAAACCCTTAAAACTCCCTCAATTCATTGTACAAATGATTGCTGGATTGATTATAGGTGTTACATTTGAGATAAAGCCATTGGAGAAATACATGACCATTTTGTTTCCATATGGAACACATGACACAATTTCAGCAATTTCCTCAATTGGTTTTGTACTATTTGTGTTCATAAATGGTGTGCAAATGGATTTCAGCATGATAACAAGAACAGGAAACAAAGCATGGACAATTTCAATAGTTGGATTAGCAATACCATTAGCACTTGGTTTTATACCATTAATACTAATCCCTGAAAGAATAGAAAGCCTTGAAAAATCTAATGGACATGGAATTTTTGTGGCATTGATATCTCACACTATGAGTTCATTTGCAGTAATTGCTTCCCTCTTAAGTGAATTACAAATCCAAAATTCCGAGATTGGTAGATTGGCTTTGTCGGCGGCTTTGGTTGGTGACATATTAAGAACAACTATTACAACAAATATTGTTGTTGTTATGGGTGTTTTATCGGTTAAGATTGATCAAGAATTTGTCTTAGGAGCTTTCGTTTTGGGTCTTGCCGTGCCCGAAGGACCTCCTTTAGGATCTGCATTGGTTAAGAAACTTCAGTTCTTTGGCATAACATTATTTTTACCTATCTTTGTCACTACCTCTGTGTTGAAAGCAGATTTTACAATGAACTTTTCATCATATCTTATGGTGTCAACTGGAATTGTGATCCTTATTACTCACTTGGTCAAAATAATAGTATGTTTTATAACCGCTCTTTGTTGCAAGATGCCCGTTACCGATGCTTTATGTCTTTCCCTCATTTTGAACACTAAAGGCGTAGTTGAAATTGGCATCTTCAATGCATTATTCGACAATGATATTATTAATGGGCAAGCGTATGCGGTGTTGATTATAAGTGTAATGATCATAGGAAGCATTGTGCATTGGTCGGTGAAGTTATTATACGATCCAACAAGAAAATATGCTGGATACCAAAAAAGGAACATAATGGGATTAAGAAGAAACTCAGATCTGAGAATACTAATAACACTTCAAAAACAAAACCATATTTCAGCTGCAATAGATTTCTTAGACCTATGTTGTCCAACACAGGAATCTCCGATCGCAGTTGATGTGGTTCACGTAATTGAGCTAGTTGGAAGAGCCTTGCCTGTTTTCATTCCTCATTGTCTTCAAAGACAAGCATCGGGATCTGCTTCGCATAAATCATACTCTGACGATGTTATCCTGGCTTTCGATATCTATGAGCATGATAATGAAAATGCAGTATCAATAAACACTTACACAGCAATATCACCAGCAAATCTCATGTTTGAAGATGTTTGTAATCTTGCATTGGATAAAGTTGCATCCATCATCATTCTTCCATTTCATATAAGGTGGTCTGCTGATGGTGTAGTTGAATCTGATGACAAGAAAATTTTAAGAGCATTGAACCAAAAAGTCCTTGAAATAGCTCCATGTTCCGTTGGAATTCTCGTAACTCGCATTAATTTGATGCCAAAACCAACTCCAACAACATCAGTAACGTCAGAATATTCCACGACCCGATTAGGTGTCATTTATTTAGGTGGAAGCGACGACGATAATGAGATTTTATGTTTAGCCAAACGAGCTATGAATAATCCTAATATCAACTTAGTTCTTTACCATCTTGTCTCTAAGGATTGTATAGAGGAATTAGAGGATTTGATGGTAAATGGTGATGAACTATTGCAAGAAATGAAAAATGCTGAAAGTGTCAGGTATCAACAGATTTTCACAAAGGATGGATCACAAACAGCTTCCTTTTTACGTGAGATTGCCAATCAACATGATTATTTTATTGTCGGGAGAAGACACGCAATTCGATCTCCTCAAACCGATGGATTATCAGAATGGAGTGAATTTCCAGAACTTGGTGTTATTGGTGATTTTCTTGCCGCACCTGATCTTAATAGTTGTGCATCTGTTATGGTTGTGCAGCAACAACTTTCACGCAAGAAAGAGCTTAATGGGTGGATTTTGTAG	2238	0.3615	MSINSNYTLFHSVTRLNQTSYEVCFDAPPHIVSDGLWGGKENGRTPMRSFFPMFELQVLIIFILTQICSFLLKPLKLPQFIVQMIAGLIIGVTFEIKPLEKYMTILFPYGTHDTISAISSIGFVLFVFINGVQMDFSMITRTGNKAWTISIVGLAIPLALGFIPLILIPERIESLEKSNGHGIFVALISHTMSSFAVIASLLSELQIQNSEIGRLALSAALVGDILRTTITTNIVVVMGVLSVKIDQEFVLGAFVLGLAVPEGPPLGSALVKKLQFFGITLFLPIFVTTSVLKADFTMNFSSYLMVSTGIVILITHLVKIIVCFITALCCKMPVTDALCLSLILNTKGVVEIGIFNALFDNDIINGQAYAVLIISVMIIGSIVHWSVKLLYDPTRKYAGYQKRNIMGLRRNSDLRILITLQKQNHISAAIDFLDLCCPTQESPIAVDVVHVIELVGRALPVFIPHCLQRQASGSASHKSYSDDVILAFDIYEHDNENAVSINTYTAISPANLMFEDVCNLALDKVASIIILPFHIRWSADGVVESDDKKILRALNQKVLEIAPCSVGILVTRINLMPKPTPTTSVTSEYSTTRLGVIYLGGSDDDNEILCLAKRAMNNPNINLVLYHLVSKDCIEELEDLMVNGDELLQEMKNAESVRYQQIFTKDGSQTASFLREIANQHDYFIVGRRHAIRSPQTDGLSEWSEFPELGVIGDFLAAPDLNSCASVMVVQQQLSRKKELNGWIL	745

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g03027	745	Pfam	Sodium/hydrogen exchanger family	60	226	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Trre6g03027	745	Pfam	Sodium/hydrogen exchanger family	234	378	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Trre6g03027	745	Coils	Coil	634	657	-	-
	Trre6g03027	745	PANTHER	CATION/H + ANTIPORTER	229	733	-	-
	Trre6g03027	745	Gene3D	-	230	398	IPR038770	-
	Trre6g03027	745	Gene3D	-	53	229	IPR038770	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g03027	Trre-Chr6	27428856	27431577	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g03027	23	733	Antiporter Super Family	AT2G28180	31.870	1.91e-117	371

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g03027	K26731		-	mtr:11420455	903.664

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