Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03027 ATGAGCATAAATTCAAATTATACTTTATTTCATTCAGTTACCAGATTGAATCAAACCAGCTATGAAGTTTGTTTTGATGCTCCACCCCATATTGTTTCAGATGGTTTATGGGGTGGTAAAGAAAATGGAAGAACTCCAATGAGATCTTTCTTTCCCATGTTTGAATTACAAGTTCTTATAATTTTTATCCTCACTCAAATTTGCAGTTTCCTTCTCAAACCCTTAAAACTCCCTCAATTCATTGTACAAATGATTGCTGGATTGATTATAGGTGTTACATTTGAGATAAAGCCATTGGAGAAATACATGACCATTTTGTTTCCATATGGAACACATGACACAATTTCAGCAATTTCCTCAATTGGTTTTGTACTATTTGTGTTCATAAATGGTGTGCAAATGGATTTCAGCATGATAACAAGAACAGGAAACAAAGCATGGACAATTTCAATAGTTGGATTAGCAATACCATTAGCACTTGGTTTTATACCATTAATACTAATCCCTGAAAGAATAGAAAGCCTTGAAAAATCTAATGGACATGGAATTTTTGTGGCATTGATATCTCACACTATGAGTTCATTTGCAGTAATTGCTTCCCTCTTAAGTGAATTACAAATCCAAAATTCCGAGATTGGTAGATTGGCTTTGTCGGCGGCTTTGGTTGGTGACATATTAAGAACAACTATTACAACAAATATTGTTGTTGTTATGGGTGTTTTATCGGTTAAGATTGATCAAGAATTTGTCTTAGGAGCTTTCGTTTTGGGTCTTGCCGTGCCCGAAGGACCTCCTTTAGGATCTGCATTGGTTAAGAAACTTCAGTTCTTTGGCATAACATTATTTTTACCTATCTTTGTCACTACCTCTGTGTTGAAAGCAGATTTTACAATGAACTTTTCATCATATCTTATGGTGTCAACTGGAATTGTGATCCTTATTACTCACTTGGTCAAAATAATAGTATGTTTTATAACCGCTCTTTGTTGCAAGATGCCCGTTACCGATGCTTTATGTCTTTCCCTCATTTTGAACACTAAAGGCGTAGTTGAAATTGGCATCTTCAATGCATTATTCGACAATGATATTATTAATGGGCAAGCGTATGCGGTGTTGATTATAAGTGTAATGATCATAGGAAGCATTGTGCATTGGTCGGTGAAGTTATTATACGATCCAACAAGAAAATATGCTGGATACCAAAAAAGGAACATAATGGGATTAAGAAGAAACTCAGATCTGAGAATACTAATAACACTTCAAAAACAAAACCATATTTCAGCTGCAATAGATTTCTTAGACCTATGTTGTCCAACACAGGAATCTCCGATCGCAGTTGATGTGGTTCACGTAATTGAGCTAGTTGGAAGAGCCTTGCCTGTTTTCATTCCTCATTGTCTTCAAAGACAAGCATCGGGATCTGCTTCGCATAAATCATACTCTGACGATGTTATCCTGGCTTTCGATATCTATGAGCATGATAATGAAAATGCAGTATCAATAAACACTTACACAGCAATATCACCAGCAAATCTCATGTTTGAAGATGTTTGTAATCTTGCATTGGATAAAGTTGCATCCATCATCATTCTTCCATTTCATATAAGGTGGTCTGCTGATGGTGTAGTTGAATCTGATGACAAGAAAATTTTAAGAGCATTGAACCAAAAAGTCCTTGAAATAGCTCCATGTTCCGTTGGAATTCTCGTAACTCGCATTAATTTGATGCCAAAACCAACTCCAACAACATCAGTAACGTCAGAATATTCCACGACCCGATTAGGTGTCATTTATTTAGGTGGAAGCGACGACGATAATGAGATTTTATGTTTAGCCAAACGAGCTATGAATAATCCTAATATCAACTTAGTTCTTTACCATCTTGTCTCTAAGGATTGTATAGAGGAATTAGAGGATTTGATGGTAAATGGTGATGAACTATTGCAAGAAATGAAAAATGCTGAAAGTGTCAGGTATCAACAGATTTTCACAAAGGATGGATCACAAACAGCTTCCTTTTTACGTGAGATTGCCAATCAACATGATTATTTTATTGTCGGGAGAAGACACGCAATTCGATCTCCTCAAACCGATGGATTATCAGAATGGAGTGAATTTCCAGAACTTGGTGTTATTGGTGATTTTCTTGCCGCACCTGATCTTAATAGTTGTGCATCTGTTATGGTTGTGCAGCAACAACTTTCACGCAAGAAAGAGCTTAATGGGTGGATTTTGTAG 2238 0.3615 MSINSNYTLFHSVTRLNQTSYEVCFDAPPHIVSDGLWGGKENGRTPMRSFFPMFELQVLIIFILTQICSFLLKPLKLPQFIVQMIAGLIIGVTFEIKPLEKYMTILFPYGTHDTISAISSIGFVLFVFINGVQMDFSMITRTGNKAWTISIVGLAIPLALGFIPLILIPERIESLEKSNGHGIFVALISHTMSSFAVIASLLSELQIQNSEIGRLALSAALVGDILRTTITTNIVVVMGVLSVKIDQEFVLGAFVLGLAVPEGPPLGSALVKKLQFFGITLFLPIFVTTSVLKADFTMNFSSYLMVSTGIVILITHLVKIIVCFITALCCKMPVTDALCLSLILNTKGVVEIGIFNALFDNDIINGQAYAVLIISVMIIGSIVHWSVKLLYDPTRKYAGYQKRNIMGLRRNSDLRILITLQKQNHISAAIDFLDLCCPTQESPIAVDVVHVIELVGRALPVFIPHCLQRQASGSASHKSYSDDVILAFDIYEHDNENAVSINTYTAISPANLMFEDVCNLALDKVASIIILPFHIRWSADGVVESDDKKILRALNQKVLEIAPCSVGILVTRINLMPKPTPTTSVTSEYSTTRLGVIYLGGSDDDNEILCLAKRAMNNPNINLVLYHLVSKDCIEELEDLMVNGDELLQEMKNAESVRYQQIFTKDGSQTASFLREIANQHDYFIVGRRHAIRSPQTDGLSEWSEFPELGVIGDFLAAPDLNSCASVMVVQQQLSRKKELNGWIL 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03027 745 Pfam Sodium/hydrogen exchanger family 60 226 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre6g03027 745 Pfam Sodium/hydrogen exchanger family 234 378 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre6g03027 745 Coils Coil 634 657 - -
Trre6g03027 745 PANTHER CATION/H + ANTIPORTER 229 733 - -
Trre6g03027 745 Gene3D - 230 398 IPR038770 -
Trre6g03027 745 Gene3D - 53 229 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03027 Trre-Chr6 27428856 27431577 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03027 23 733 Antiporter Super Family AT2G28180 31.870 1.91e-117 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03027 K26731 - mtr:11420455 903.664