Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03014 ATGGTGACTCTATTGAAAAGGGAAAAGGACATTGATATCGCTTTTGATCAACATTCAATTGACGAGTATAAGGCTCAAGAGGCTGCAATGTCAGTTCAAGGAAAAGTGGTGGATTCGCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTGGCTGATGAAATGGGTCTTGGGAAAACTGTTCAGTCTGTATCAATGCTTGGTTTTCTACAAAATGCCCAGCAAATCCATGATCCTTTTCTTGTAGTTGTGCAGTTGTCCACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGTTTCCCGATATGAATATTATTGTATATGTTGGTACTCGGGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGACAAAAAGCCTGGTAAACCAATAAACTTCAATGCACTTTTGATTACATATGAAGTAATTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAAATGGAGTTATCTGATGGTAGATGAAGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTATACATCACTTTTAAAATTTAGCACCAAGAATAAGTTTCTCATCACCGGGACTCCTTTACAAAATAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAAAATCTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCCTATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGAAATGTCTCATCTTCAGAAACATTGGACTAAAAAAACCTCAATGAATTTGATTAGTAAATTCAAGTGTACTTGTGCTAAATTTCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCACGGCTATGGTGGGGACTCTGGAGGCAGTGACAACAGTAAACTTGAGAGAATTGTCTTTAAGAGGATTAGATGGTTTTTTAACATGGGTCATGCCATGTGCCCTAAGGGCACATATTAG 1188 0.3838 MVTLLKREKDIDIAFDQHSIDEYKAQEAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHDPFLVVVQLSTLSNWAKEFRKWFPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPINFNALLITYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTSLLKFSTKNKFLITGTPLQNSVEELWALLHFLDPNKFKSKDEFVQNYKNLSSFHENELANLPMELRPHILRRVIKDVEKSLPPKIERILRVEMSHLQKHWTKKTSMNLISKFKCTCAKFQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFKRIRWFFNMGHAMCPKGTY 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03014 395 SMART ultradead3 59 255 IPR014001 -
Trre6g03014 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 360 IPR027417 -
Trre6g03014 395 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 193 202 IPR002464 -
Trre6g03014 395 Pfam SNF2-related domain 82 351 IPR000330 GO:0005524|GO:0140658
Trre6g03014 395 Gene3D - 294 359 IPR027417 -
Trre6g03014 395 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 8 375 - -
Trre6g03014 395 FunFam Photoperiod-independent early flowering 1 33 307 - -
Trre6g03014 395 Gene3D - 54 293 IPR038718 -
Trre6g03014 395 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 75 247 IPR014001 -
Trre6g03014 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 284 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03014 Trre-Chr6 27304813 27311947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03014 11 358 RAD5 or RAD16-like Gene Family AT3G16600 22.165 1.61e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre6g03014 SNF2_N 4.2e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03014 K11367 - gmx:100792398 637.491