Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03013 ATGGCACGACTCACTAATGGGGTCGGAGAAATTACCATTACCATTGAAATTGAAGAGGACGATGGTGACTCTATTGAAAAGGTGTTTTGGCATCAGCTGAAGGGCACAGCTGAAGATGCCCAAAGGAATAATAGATCCACAGAGCCTGCTTTAATGAGTCACTTGTTCGATTCTGAATTTGATTGGAATGAGATTGAGTTTTTGATAAAATGGAAGGGGAAATCTCATTTGCACTCCCAATGGAAGTTTTTTGCAGAGCTACAAAATGCTCAAGAGGCTGCAATGTCAGTTCAAGGAAAAGTGGTGGATTCGCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTGGCTGATGAAATGGGTCTTGGGAAAACTGTTCAGTCTGTATCAATGCTTGGTTTTCTACAAAATGCCCAGCAAATCCATGATCCTTTTCTTGTAGTTGTGCAGTTGTCCACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGTTTCCCGATATGAATATTATTGTATATGTTGGTACTCGGGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGACAAAAAGCCTGGTAAACCAATAAACTTCAATGCACTTTTGATTACATATGAAGTAATTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAAATGGAGTTATCTGATGGTAGATGAAGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTATACATCACTTTTAAAATTTAGCACCAAGAATAAGTTTCTCATCACCGGGACTCCTTTACAAAATAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAAAATCTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCCTATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGAAATGTCTCATCTTCAGAAACAGTTTCTCTTCTAA 1140 0.3895 MARLTNGVGEITITIEIEEDDGDSIEKVFWHQLKGTAEDAQRNNRSTEPALMSHLFDSEFDWNEIEFLIKWKGKSHLHSQWKFFAELQNAQEAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHDPFLVVVQLSTLSNWAKEFRKWFPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPINFNALLITYEVILKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTSLLKFSTKNKFLITGTPLQNSVEELWALLHFLDPNKFKSKDEFVQNYKNLSSFHENELANLPMELRPHILRRVIKDVEKSLPPKIERILRVEMSHLQKQFLF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03013 379 CDD CD1_tandem 21 90 - -
Trre6g03013 379 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 312 IPR014001 -
Trre6g03013 379 ProSiteProfiles Chromo and chromo shadow domain profile. 23 91 IPR000953 -
Trre6g03013 379 FunFam Photoperiod-independent early flowering 1 97 372 - -
Trre6g03013 379 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 258 267 IPR002464 -
Trre6g03013 379 SMART ultradead3 124 320 IPR014001 -
Trre6g03013 379 Gene3D - 359 377 IPR027417 -
Trre6g03013 379 Gene3D - 18 108 - -
Trre6g03013 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 349 IPR027417 -
Trre6g03013 379 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 108 376 - -
Trre6g03013 379 Pfam SNF2-related domain 147 377 IPR000330 GO:0005524|GO:0140658
Trre6g03013 379 Gene3D - 119 358 IPR038718 -
Trre6g03013 379 SUPERFAMILY Chromo domain-like 20 92 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03013 Trre-Chr6 27304111 27311768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03013 150 316 RAD5 or RAD16-like Gene Family AT1G02670 30.220 5.21e-16 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre6g03013 SNF2_N 1.7e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03013 K11367 - gmx:100792398 547.354