Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03009 ATGAGACAATTTGTATGTAGTAGACATGGATTAAGAGATAAAAAACACTTGTGTAGGTTAGATAGGAAAAGGGAACATAGACGATTGACCCGTACTGATTGCAAAGCTAGGCTTCGTGTGAACTACAAAGCCAAGAATGGTAGATATGTAGTGTCAATTTTTGTAGAGGGTCATAACCATGAATTAACCCCATCTAAGTATGTGCACCTACACCCTGTTTATCGTAAAATTTCAGAATCAGATAAAGCTCAAATTGACGGTCTTGAGTCACATGGTACTAGAACTTGTCATATAATGGGGTATATGGTTGCTCAGAAGGGTGGGTATGATGGTGTTGGGTTTACAAAGAAAGATTTGTACAATTACTTTGATAAAAAAATGCGCGATATTACTAAAGACGGTGATGTTGAAGCTTCTCTAAATTATTTGAATGTAAAGTCAGGTACTGATCCCATGCTCTATGCTGAATATGCTGTTGACAGCAGCAATGGACGAATGAAGTGTCTTTATTGGGCTGATGGGATTAGTAGATCTGACTACTTTTGTTTTGGTGATGTGGTTGCATTTGACACCACTTATAAGAAGAACAAATATAACTACCCGTTGGTTTTATTCTCTGGTTGTAACCACCACGGGCAGACAATTATTTTTGGCACTGCTTTGGTATCAGATGAAACCACAGATACCTATAAGTGGGTGTTGAGGTGTTTTTTGGAGTGCATGGAAAACAAACACCCAAAAGCAGTGCTGACAGATGTGGATGGTGCTATGAGGGAGGCTATAAAACAAGTTTTTCCCCATTCGACCCATAGGTTATATGTGTGGCATCTGAATAAGAATGCATATGAAAATGTGAAGAATTCAGAATTTTGGGATAGATTTCAGAAAGCCTTGTACTCCAATTTTACTGTTAATGAATTTGAAGAGTTTTGGACAAATCTGGTTAAAGATTGTGGACTTGAAGGAAATCCATGGGTTGTCAAAATGTATGAAAACAGGTCAATATGGGCATCTGCGTACTTACGTGATAGGTTTTTTGGACGTTTCAGAACTACGTCGCAATGTGAAGCGATTAATGCAATCATCAAGTGTTATGTAAGGAGGAAAAGATGCGTTTATGAATTTATGCACAATTTTGACAAGGCTGTGAGAGGATACAGGAACAATGAAATAGTAGCTGATTTTACATCAAAGTATACAGAACCTGTGTTGACAACCCACTTGCGATTGATTGAGTCTCATGCCGCTAAGACTTATACAGCGGATATTTTCAAAGAAGTGAAGGAGGAAATTATGAAGGCTGGTGCATTGATTGTTCGGCAAAAAATTGAACTCGGGGATACGAAGATCTATACTTTGACAAAATATCGAAAGGATAAATATGAAAGAGAAGTTGTTTATGAGGGTTCGACATTACAATGTTCGTGTAGGTTATTTGAATCACGTGATCTTCCATGTTCTCATATTTTTTATGTCATGAAGGAAGAACATGTTGATCAAATTCCCCGCACGTTGGTTTTGTCGCGTTGGACCAAGGATGCCAAAAGTGAATATCTGAACATTGATTGTAATGGTATAAGTGAATCGAATCTGATAGAGCAAGCTCGTTTTGGTGCATATTGTGCTGCTTTTACTAGTTTTTGTAAAGAAGCTTCAAAAAAAGATGGTGTATATGTGGAAATAATGGAGGACATCTTGAATTTGCAAAAAAAGTATTGCAGTAATGATGATCCTATTGCGACAGAAAACCCACCAGTACGTGATCCGACTGTGGTGAATAGTAAAGGTGCTCCAAAGAAAAGGAAGAACGACAAAAAATCTGTCAAGCGCTGTACAATATGCAAGAGTCCAACTCATAATGCGAGGACTTGTTCGGGAAAACGAAATGTTGAGTCTGAGGCGGTGTCGGTAGGTGATTCTTTAAGCCAAAATGAGAAAGTTGCGAAGAAAGGTAAAAGAAAACAAAGTTGTGATGGTGAAACAAGTGTGCAAAATAAATGTTCGGTTCCGCCGCAAAATCGTGGTGCTACCACAACATCAAATATGGAAGTTAGAAGCAGACCAATCCCTCCAATGAATGTTTCTCAACTTGTGATGCACGTGATGCCTGTGATGCAATCTGTAGGTACATCGTCGCAAGTACAACCCATGCACCCAATATATGGAATGCCCTTTGTTCAAAGTTCAAATTCGTGCTTCAGTCTGTTACAACAAGTAATGAACAATGCTGGTCATGAATGA 2241 0.3851 MRQFVCSRHGLRDKKHLCRLDRKREHRRLTRTDCKARLRVNYKAKNGRYVVSIFVEGHNHELTPSKYVHLHPVYRKISESDKAQIDGLESHGTRTCHIMGYMVAQKGGYDGVGFTKKDLYNYFDKKMRDITKDGDVEASLNYLNVKSGTDPMLYAEYAVDSSNGRMKCLYWADGISRSDYFCFGDVVAFDTTYKKNKYNYPLVLFSGCNHHGQTIIFGTALVSDETTDTYKWVLRCFLECMENKHPKAVLTDVDGAMREAIKQVFPHSTHRLYVWHLNKNAYENVKNSEFWDRFQKALYSNFTVNEFEEFWTNLVKDCGLEGNPWVVKMYENRSIWASAYLRDRFFGRFRTTSQCEAINAIIKCYVRRKRCVYEFMHNFDKAVRGYRNNEIVADFTSKYTEPVLTTHLRLIESHAAKTYTADIFKEVKEEIMKAGALIVRQKIELGDTKIYTLTKYRKDKYEREVVYEGSTLQCSCRLFESRDLPCSHIFYVMKEEHVDQIPRTLVLSRWTKDAKSEYLNIDCNGISESNLIEQARFGAYCAAFTSFCKEASKKDGVYVEIMEDILNLQKKYCSNDDPIATENPPVRDPTVVNSKGAPKKRKNDKKSVKRCTICKSPTHNARTCSGKRNVESEAVSVGDSLSQNEKVAKKGKRKQSCDGETSVQNKCSVPPQNRGATTTSNMEVRSRPIPPMNVSQLVMHVMPVMQSVGTSSQVQPMHPIYGMPFVQSSNSCFSLLQQVMNNAGHE 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03009 746 MobiDBLite consensus disorder prediction 578 604 - -
Trre6g03009 746 PANTHER OS01G0519700 PROTEIN 2 629 - -
Trre6g03009 746 MobiDBLite consensus disorder prediction 660 686 - -
Trre6g03009 746 MobiDBLite consensus disorder prediction 618 643 - -
Trre6g03009 746 SMART 26again6 472 499 IPR006564 GO:0008270
Trre6g03009 746 ProSiteProfiles Zinc finger SWIM-type profile. 461 497 IPR007527 GO:0008270
Trre6g03009 746 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
Trre6g03009 746 MobiDBLite consensus disorder prediction 645 659 - -
Trre6g03009 746 MobiDBLite consensus disorder prediction 618 688 - -
Trre6g03009 746 Pfam MULE transposase domain 186 280 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03009 Trre-Chr6 27277993 27280395 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre6g03009 MULE 2.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03009 - - tpra:123887991 1007.67