Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03003 ATGGCTATGAAACAAATGATGCTGAGTTTTAAGGAATTGACTGTTATGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCCGGAACACTGGTTGTGTCTTAATAATTTCCAAGCAACTACTATTCGCAGTGACAGGACACAGCAGGAAAGAGGAGCAGCATTGAGATTATTTAAAAGTGGCAACACCCCGATATTGGTTGCCACTGATATGGCTGCACGTGGTCTTTATATTTCTCATGTTGCACATGTAGTTCACTTTGACCTTCCCAATGATATTGATGATTATGTACTCCGTATTTGA 318 0.4025 MAMKQMMLSFKELTVMQALTLVFVETKKGADAPEHWLCLNNFQATTIRSDRTQQERGAALRLFKSGNTPILVATDMAARGLYISHVAHVVHFDLPNDIDDYVLRI 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03003 105 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 16 105 - -
Trre6g03003 105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 105 IPR027417 -
Trre6g03003 105 CDD SF2_C_DEAD 20 105 - -
Trre6g03003 105 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 2 105 IPR001650 -
Trre6g03003 105 SMART helicmild6 31 105 IPR001650 -
Trre6g03003 105 Pfam Helicase conserved C-terminal domain 12 104 IPR001650 -
Trre6g03003 105 Gene3D - 4 105 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03003 Trre-Chr6 27230064 27232839 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03003 10 105 Eukaryotic Initiation Factors Gene Family AT3G19760 34.375 2.16e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03003 K11594 - csin:114273689 154.066