Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02999 ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCTGCGGCTGAAAATGCACCACCACCAACTTCTGCTGCTAACAACAATGCTACCAACAACACTCAACCTCCTTCTCGACCTGTTTATGTTCCTCCTCATCTGAGGAACCGTGGACCAACAGCACCAGCACCAGCTTCATCCGAGAGATTTTCTGCTCCCACTGCTTTTGATAATTCTGGATCGCGGTGGGTGCCGCCTCCGAGGAACGATTATCGTGGTCGTGGTGGTGGTGGTGGTGGTGGCGGTTTTGGGAATAGGACTGGTGGCGGTGGTTGGGATCGGCGTGAGGCGAATCCGTTTGCGGATCAGGATGATTCCGAAGAGCCTGCTACTCAAGAGGAGCAGGAAAGTACAGGGATTAACTTTGATGCTTATGAGGATATTCCGGTGGAGACTAGCGGTGGGAATGTTCCTCCTCCAGTGAATACTTTTGCTGAGATTGACTTGGGTGAAGCACTTAATCAGAATATTAGGCGATGCAAATATGTGAAGCCGACGCCTGTTCAGCGGCATGCAATACCGATATCTCTTGCAGGAAGGGATTTGATGGCTTGTGCGCAGACCGGTTCTGGAAAGACTGCTGCTTTTTGTTTTCCGATTATCAGTGGAATTATGACGGGCCAACCTGCTCAGAGGCCACCTCGTGGGGTGCGTACCGTGTGTCCACTCGCGCTCGTTCTCTCGCCAACTAGGGAGCTATCGATGCAGATACACGAAGAGGCTAGGAAGTTTTCATATCAAACTGGGGTTAGGGTGGTGGTTGCTTATGGAGGAGCTCCAATAAACCAGCAGCTACGAGAGCTTGAGAGAGGGGTAGACATTCTTGTCGCAACTCCAGGAAGACTAGTAGATTTGTTGGAAAGGGCTAGAGTTTCACTCTCATTGATTAGGTATCTGGCCTTAGACGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAGATAAGGAAGATAGTAGAACAAATGGACATGCCTCCGGCAGGTGTCAGACAGACTATGCTGTTCAGTGCCACTTTTCCTAAAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGGAGAGTGGGATCAAGTACCGATTTGATTGACCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTGGAACACTGGCTGTGTCTTAATAATTTCCCAGCAACTACTATTCACGGTGACAGGACTCAACAGGAAAGAGAAGCAGCATTGAGATCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTCGCACATGTAGTTAACTTTGACCTTCCCAATGATATTGATGATTATGTGCACCGTATTGGAAGGACGGGTAGAGCAGGAAAAAAAGGTCTTGCAACTGCATTCTTTAATGAAAACAATACATCCCTAGCAAGGTCTCTACAAGATTTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCGCGGTTCGCTGCACGATCATCCTTTGGTGGAGGAAAGAACCGTCGATCAGGAGGCCGATTTGGTGGCCGCGACTTTCGAAGAGATGGTTCTTTTAATAGGGGTGGTTCTGATTACCGTGGTGCAGGAAATAGTAGTGGTGGATATGGGGCTTCTGGTGGGTATGGTGGAGGATATGGTGGTGGGTATGCGGGAAATAGCGCCGGTCCTGGGGTGACCAGTGCATGGGACTGA 1863 0.4836 MRSSWADLAANSAAENAPPPTSAANNNATNNTQPPSRPVYVPPHLRNRGPTAPAPASSERFSAPTAFDNSGSRWVPPPRNDYRGRGGGGGGGGFGNRTGGGGWDRREANPFADQDDSEEPATQEEQESTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSLIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRTQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSLARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGRFGGRDFRRDGSFNRGGSDYRGAGNSSGGYGASGGYGGGYGGGYAGNSAGPGVTSAWD 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02999 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 524 IPR027417 -
Trre6g02999 620 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Trre6g02999 620 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 122 547 - -
Trre6g02999 620 MobiDBLite consensus disorder prediction 1 130 - -
Trre6g02999 620 CDD DEADc_DDX3_DDX4 154 375 IPR044763 GO:0003724|GO:0005524
Trre6g02999 620 Gene3D - 108 371 IPR027417 -
Trre6g02999 620 Coils Coil 518 538 - -
Trre6g02999 620 Gene3D - 372 551 IPR027417 -
Trre6g02999 620 FunFam ATP-dependent RNA helicase RhlB 372 551 - -
Trre6g02999 620 MobiDBLite consensus disorder prediction 552 591 - -
Trre6g02999 620 FunFam Probable ATP-dependent RNA helicase DDX4 115 371 - -
Trre6g02999 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 369 IPR014001 -
Trre6g02999 620 SMART ultradead3 172 384 IPR014001 -
Trre6g02999 620 Pfam Helicase conserved C-terminal domain 393 508 IPR001650 -
Trre6g02999 620 SMART helicmild6 427 508 IPR001650 -
Trre6g02999 620 CDD SF2_C_DEAD 381 517 - -
Trre6g02999 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 547 IPR001650 -
Trre6g02999 620 MobiDBLite consensus disorder prediction 561 577 - -
Trre6g02999 620 MobiDBLite consensus disorder prediction 1 35 - -
Trre6g02999 620 Pfam DEAD/DEAH box helicase 177 358 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02999 Trre-Chr6 27169858 27177321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02999 142 540 Eukaryotic Initiation Factors Gene Family AT3G19760 32.500 2.16e-64 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02999 K11594 - gmx:100795756 903.664