Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02984 ATGAGAGGAAGAAGCTACACTCCATCTCCACCACCACGTTACAGCAGAAGAGGCGGTGGAAGAAGTCCAAGTCCCCGTCGTCGTTACGCTCCCCGTCAAAGCGATCTACCTACCAGTCTTCTTGTTCGTAACCTTCGCCATGATTGTAGACCTGAAGATCTTCGCAGACCTTTTGGTCAATTTGGTCCTTTAAAAGACATTTATCTCCCTAAAGATTATTACACTGGACAGCCGCGTGGATTTGGTTTTATCCAATTTGTGGATCCTGCTGATGCTGCCGATGCTAAATATCATATGGATGGTCAAGTTCTTCTTGGTAGGGAGCTGACTGTTGTTTTTGCTGAGGAAAATAGAAAGAAGCCTACTGAGATGAGGGTCAGAGAGAGAAGTGGTGGTCGGTATTCTGATAGAAGGTCTCCTCGACGCTACTCTCGTTCGCCCCGCTATTCCCGGTCTCCACCTCGCCACAGATCTCGCTCCCGCGGAAGTCGTGACTATTATTCCCCTCCTAAACGAAGGGAATATTCAAGATCTCTATCTCCTGAGGATAGAAGGCACAGTCGAGAAAGATCACAGCATAGCAGAGAGAGGTCATACTCACGCTCTCCACCCAAAAATGGGGACGCGAGAAGCCGTAGTCAGAGTCCAGTGAAGAGCCCAATTCCAAGCAGAAGTTCAAGTCCGAATGGTGATGTAAGGGAATCGCCTCGCAGTAGGTCCCCCAGTCAGTGA 732 0.4918 MRGRSYTPSPPPRYSRRGGGRSPSPRRRYAPRQSDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRVRERSGGRYSDRRSPRRYSRSPRYSRSPPRHRSRSRGSRDYYSPPKRREYSRSLSPEDRRHSRERSQHSRERSYSRSPPKNGDARSRSQSPVKSPIPSRSSSPNGDVRESPRSRSPSQ 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02984 243 MobiDBLite consensus disorder prediction 1 37 - -
Trre6g02984 243 MobiDBLite consensus disorder prediction 144 158 - -
Trre6g02984 243 MobiDBLite consensus disorder prediction 159 203 - -
Trre6g02984 243 MobiDBLite consensus disorder prediction 118 143 - -
Trre6g02984 243 Gene3D - 28 148 IPR012677 -
Trre6g02984 243 SUPERFAMILY RNA-binding domain, RBD 37 144 IPR035979 GO:0003676
Trre6g02984 243 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 37 233 - -
Trre6g02984 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Trre6g02984 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Trre6g02984 243 SMART rrm1_1 39 112 IPR000504 GO:0003723
Trre6g02984 243 MobiDBLite consensus disorder prediction 118 243 - -
Trre6g02984 243 MobiDBLite consensus disorder prediction 204 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02984 Trre-Chr6 27056077 27058544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02984 38 147 Eukaryotic Initiation Factors Gene Family AT2G36660 30.909 9.70e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02984 K12900 - gmx:100775883 286.189