Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02983 ATGAGGAATCCTTCATCATCAACAAATCAATCCAAATCAACAACAACAACAAATTCAGTTAAGAAGAAGCAGAAAATCAACAACAACAACAGTAACAATAATGGAAGCAGTAGCAGTACAAGTAAGAACACCACCACCACAACAACTACACCTTGTTGCAGTAAAATAGGATTAAAGAGAGGACCATGGACATCTGAAGAAGATGAAGTGTTATCAGAATATATTAAGAAAGAAGGTGAAGGTCGTTGGAGAACTCTTCCCAAACGTGCTGGTCTTCTTCGTTGTGGTAAAAGTTGTCGTCTCCGTTGGATGAATTATCTTCGTCCTTCTGTTAAACGTGGTCAGATCGCTCCTGATGAAGAAGATCTCATCCTCCGTCTTCATCGTCTCCTCGGTAACAGGTGGTCATTGATAGCTGGAAGAATTCCGGGAAGAACGGATAATGAGATAAAGAATTATTGGAACACACATCTTAGTAAGAAACTCATTAATCAAGGGATTGATCCAAGAACACACAAGCCTCTTAACAATATAATTAATCCATCTACTTCTTCAACAATCCCAAATATTAATCACCAAATCACTACTACTCCTTTCACATCTTCAGCTACTCAACATCATCCTATTACTACTATGATTTACAATGAATCATCTGATCATCATCATTTAGCTCAATATCATAATCAGTATTATCCACAACAAGAAGAACAGGCTAAGGAGGTTAATGATGATGCTAATTGTGATAACTTAATTAATGATGTTTCTGCAATGGATAAAGCAGCCAACAATAATAAAGGAGATTGCGATAAAAGTAGTACCGATTATTGTTGCGATGATGTGTTTACTTCATTCTTGGATTCATTGATCAATGACGATGCTTTTGCTGCACATCGATCGGAGAATGATCTTGCTGATAATCCTTTGGTTTCATCTGCTGCACCATCAGTTTTGTGGGAATCACCACTTATGTCTACTAATTTCACCCAAAACAAAGACTCAACCAACACCGGCAAGCTTCATGATGCATAG 1029 0.3751 MRNPSSSTNQSKSTTTTNSVKKKQKINNNNSNNNGSSSSTSKNTTTTTTTPCCSKIGLKRGPWTSEEDEVLSEYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNNIINPSTSSTIPNINHQITTTPFTSSATQHHPITTMIYNESSDHHHLAQYHNQYYPQQEEQAKEVNDDANCDNLINDVSAMDKAANNNKGDCDKSSTDYCCDDVFTSFLDSLINDDAFAAHRSENDLADNPLVSSAAPSVLWESPLMSTNFTQNKDSTNTGKLHDA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02983 342 ProSiteProfiles Myb-like domain profile. 55 107 IPR001005 -
Trre6g02983 342 SUPERFAMILY Homeodomain-like 57 154 IPR009057 -
Trre6g02983 342 Gene3D - 60 112 - -
Trre6g02983 342 Pfam Myb-like DNA-binding domain 117 158 IPR001005 -
Trre6g02983 342 Pfam Myb-like DNA-binding domain 60 107 IPR001005 -
Trre6g02983 342 FunFam Myb transcription factor 57 113 - -
Trre6g02983 342 CDD SANT 118 158 IPR001005 -
Trre6g02983 342 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 50 248 - -
Trre6g02983 342 SMART sant 59 109 IPR001005 -
Trre6g02983 342 SMART sant 112 160 IPR001005 -
Trre6g02983 342 MobiDBLite consensus disorder prediction 1 53 - -
Trre6g02983 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 162 IPR017930 -
Trre6g02983 342 CDD SANT 62 107 IPR001005 -
Trre6g02983 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 107 IPR017930 -
Trre6g02983 342 FunFam transcription repressor MYB5-like 117 184 - -
Trre6g02983 342 Gene3D - 117 179 - -
Trre6g02983 342 ProSiteProfiles Myb-like domain profile. 108 158 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02983 Trre-Chr6 27047155 27048416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02983 38 295 MYB Transcription Factor Family AT3G13540 54.198 2.89e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g02983 Myb_DNA-binding 5.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02983 K09422 - gmx:100797847 325.094