Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02972 ATGGATGAAACAATGGCGGCAAGATATTGGTGTCATGCTTGTTCTCAAATAATTAGTCCCATAATGGGAATGGAGATAAAATGCCCAGTTTGCCAAGGTGGGTTTGTTGAAGAAATGAGCAGTGCTACTGGTATTAGTGACTTGCAAAATATACCAGAACCTGATTTTGGATCGGATCGTACTCCCTCCCTTTGGGCACCAATCTTGCTAGGTATGATGGGTAATCTGCGGCTTCGTCGAAGATTGAGACGAATAGAGCTTGAAGACGACTATGATAATGGTAATCGTGATGATGATGATAATAATGGTGGTGTAGGACATTATGATCGAGAGCTTGAGTCCATCCTTCGAAGAAGGAGAAGAAGCTCGGCTACCATCCAACAATTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAACCACAAGAGAATGCTATTGACAGTGATGACCATGTTAGGGAAAGAGAAAGAGAAAGAGAGCATGTAATCTTAATTAACCCTTTTAATCAGACTATTATAGTTCAAGGTTCCTATGATTCAAACCGGGATCAAAGTGATAATCATAATCCTATTGGGTCTCTGGGTGACTATTTTGTAGGGCCTGGTTTGGATCTATTGTTGCAACATTTGTCTGAGAATGACCCTAATAGATATGGAACTCCACCTGCACCAAAGGAAGCCGTTGAAGCTCTACCTACTGTGAAGATCAATGAGAATTTGCAATGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGTCTCAATTGCGAGTGGATGAATCTAAGCAAGATTCTGATGTTTCAAGGAACCGCAGAAATCAAAGGGAGGATGCAAATATCGGACATGCCAATGCCGATGCTGAAGGAGATAGTGAAGGGAGAAGTCCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCGTCTTCTAGTTCCAGTTCAAATGGAAATGATGTTCATTGA 1074 0.4181 MDETMAARYWCHACSQIISPIMGMEIKCPVCQGGFVEEMSSATGISDLQNIPEPDFGSDRTPSLWAPILLGMMGNLRLRRRLRRIELEDDYDNGNRDDDDNNGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSEPQENAIDSDDHVREREREREHVILINPFNQTIIVQGSYDSNRDQSDNHNPIGSLGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVEALPTVKINENLQCSVCLDDFEVGSEAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDESKQDSDVSRNRRNQREDANIGHANADAEGDSEGRSPSGGRRFSFPWPFNGLFSSSSSSSSSNGNDVH 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02972 357 Pfam Ring finger domain 241 283 IPR001841 -
Trre6g02972 357 MobiDBLite consensus disorder prediction 290 332 - -
Trre6g02972 357 SUPERFAMILY RING/U-box 231 291 - -
Trre6g02972 357 CDD RING-H2_RNF126-like 241 283 - -
Trre6g02972 357 SMART ring_2 242 282 IPR001841 -
Trre6g02972 357 FunFam E3 ubiquitin-protein ligase RING1-like 209 289 - -
Trre6g02972 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 288 IPR013083 -
Trre6g02972 357 MobiDBLite consensus disorder prediction 290 325 - -
Trre6g02972 357 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Trre6g02972 357 MobiDBLite consensus disorder prediction 133 153 - -
Trre6g02972 357 ProSiteProfiles Zinc finger RING-type profile. 242 283 IPR001841 -
Trre6g02972 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 148 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02972 Trre-Chr6 26866879 26869016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02972 142 289 C3H Transcription Factor Family AT1G26800 38.000 2.78e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02972 - K11982 gmx:100784876 440.654