Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02962 ATGGTGAGTGTATCTGGCTTTGAAGAAGTTGTTGAGCCACCGGCTTTACCTCCATCACCTCCTGATGTGCTTCCTGATATGGAAACAGAAGAAATAGCTCTCCCAACCTATTCTATTATCAGTAGGCCTGGTGTTGGGAACACAGGGAAGCGCATAGCTTTGCTTGTAAACCTCTTCAAAGTTGCCGCTGATGCTACAGATGCAACCTTTTACCAGTATAGTGTTACCATAACTTCGGAAGATAAAAGAGCTGTCGAAAACAAGGGCATTGGGAGAAAACTGATTGATAGGCTTCTCCAAACATACTCTTCTGAACTTGGCGGCAAAAGCTTTGTGTATGATGGAGAAAGAACTTTCTACACAGTCGGCCCTCTTCCAGATAATAAATTTGAGTTCACAGTATTACTCGAGGAATCATTTGCCAAACGCAGCAGTACCGAGTGTCCTGGTGCTGATGGAAGTCTTCATGGGGAAAATAAAAGGTCAAAACGTTCTTTTCCGCCAAAGTCATTCACAGTGGAGATAAATTTTGCTGCCAAAATACCCTTGCAATCCATTCCTCTTTCCCTTAAAGGGATTGAGTCATATCCTAATTCTCAAGATGCGTTGAGGGTGCTTGATACCGTACTGAGGCAGCGAGCAGCTAACAGTGGGTGTATCTTGGTAAGGCAATCTTATTTTCATGATGACTCGAAGAATTTCATTGATGTTGGAGGTGGAGTAACAGGAGTTCGAGGTTTTCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATATGGATGTGTCCACAACGATGATCGTAAAACCTGGACCTGTAATTGATTTTCTCCTAACCAACCAGAGTGTGAGGGAACCTCGTTATATTGACTGGGCAAAGGTGACAAACAACTAA 900 0.4311 MVSVSGFEEVVEPPALPPSPPDVLPDMETEEIALPTYSIISRPGVGNTGKRIALLVNLFKVAADATDATFYQYSVTITSEDKRAVENKGIGRKLIDRLLQTYSSELGGKSFVYDGERTFYTVGPLPDNKFEFTVLLEESFAKRSSTECPGADGSLHGENKRSKRSFPPKSFTVEINFAAKIPLQSIPLSLKGIESYPNSQDALRVLDTVLRQRAANSGCILVRQSYFHDDSKNFIDVGGGVTGVRGFHSSFRLTQGGLSLNMDVSTTMIVKPGPVIDFLLTNQSVREPRYIDWAKVTNN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02962 299 SMART DUF1785_2 220 272 IPR014811 -
Trre6g02962 299 Pfam N-terminal domain of argonaute 50 210 IPR032474 -
Trre6g02962 299 Pfam Argonaute linker 1 domain 222 270 IPR014811 -
Trre6g02962 299 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g02962 299 MobiDBLite consensus disorder prediction 145 165 - -
Trre6g02962 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 38 285 - -
Trre6g02962 299 SUPERFAMILY PAZ domain 191 280 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02962 Trre-Chr6 26781066 26782325 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02962 42 280 Eukaryotic Initiation Factors Gene Family AT1G48410 35.950 3.47e-30 118